View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11761_high_3 (Length: 836)

Name: NF11761_high_3
Description: NF11761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11761_high_3
NF11761_high_3
[»] chr7 (4 HSPs)
chr7 (211-829)||(43015960-43016580)
chr7 (169-293)||(43015730-43015854)
chr7 (680-807)||(12489526-12489652)
chr7 (213-259)||(43015885-43015931)
[»] chr8 (6 HSPs)
chr8 (175-374)||(23735469-23735678)
chr8 (244-374)||(18309765-18309893)
chr8 (218-284)||(18223269-18223335)
chr8 (15-56)||(18309623-18309664)
chr8 (15-62)||(23735294-23735342)
chr8 (679-785)||(40499432-40499540)
[»] chr3 (3 HSPs)
chr3 (681-809)||(33890447-33890571)
chr3 (716-801)||(35495337-35495422)
chr3 (708-745)||(35596328-35596365)
[»] chr1 (2 HSPs)
chr1 (679-826)||(31123245-31123390)
chr1 (733-785)||(29500361-29500413)
[»] chr2 (4 HSPs)
chr2 (678-818)||(11361737-11361878)
chr2 (708-745)||(23899196-23899233)
chr2 (708-745)||(23889595-23889632)
chr2 (708-745)||(23893671-23893708)
[»] chr4 (2 HSPs)
chr4 (679-801)||(23112121-23112241)
chr4 (708-745)||(37877973-37878010)


Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 211 - 829
Target Start/End: Original strand, 43015960 - 43016580
Alignment:
Q  211 aaatggagcagaatcaagttcaagaacaaacactgaaccaaagaaataattccacatttgtgcaactctgaaaagaaagaaagnnnnnnnnn-cacaaac 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||    
T  43015960 aaatggagcagaatcaagttcaagaacaaacactgaaccaaagaaataattccacatttgtgcaactctgaaaagaaagaaagaaaaaaaaaacacaaac 43016059  T
Q  310 tgcacaagcataaatgcttctgaaataataaaatcaatgatggaaaatgaagatgaaaattgagatactagcgaaaacttcacactcactttgattcagt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  43016060 tgcacaagcataaatgcttctgaaataataaaatcaatgatggaaaatgaagatgaaaattgagatattagcgaaaacttcacactcactttgatttagt 43016159  T
Q  410 ttaatgaagaaaaagaagcacaaacttcacacgttatgaagatggataaaagttgaaagaataaatagttgagaatgttgnnnnnnnnagagagaatttt 509  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  43016160 ttaatgaagaaaaagaagcacaaacttcacacattatgaagatggataaaagttgaaagaataaatagttgagaatgttgttttttttagagagaatttt 43016259  T
Q  510 gttgtgtgtgtttgataaaaaagatcaagtgaataaatattagtggaagacgaaaacttgaccaaaataaccaaatttattcgttttttgttgaccgaaa 609  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43016260 gttgtgcgtgtttgataaaaaagatcaagtgaataaatattagtggaagacgaaaacttgaccaaaataaccaaatttattcattttttgttgaccgaaa 43016359  T
Q  610 gcgatcggaatttgttagtattatgtacgggcggaattattcgctacatgcatatctgactgttattattaggaaaaagatacatagaccaccatttgtg 709  Q
    |||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43016360 gcgaccggaatttgttagtattatgtacggacggaattattcgctgcatgcatatctgactgttattattaggaaaaagatacatagaccaccatttgtg 43016459  T
Q  710 tacacactttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagtttggtag-ttttactcacaaccacacaattttctt 808  Q
    ||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  43016460 tacccactttgtaccactgctgatgtggcaggggtagattgctaatttcatatgctaggggtagtttggtagtttttactcacaaccacacaattttttt 43016559  T
Q  809 ctcttcctctcctctgtgctc 829  Q
    |||||||||||||||||||||    
T  43016560 ctcttcctctcctctgtgctc 43016580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 169 - 293
Target Start/End: Original strand, 43015730 - 43015854
Alignment:
Q  169 caatacattcacgtatatagcactaaaaggttttgaatccaaaaatggagcagaatcaagttcaagaacaaacactgaaccaaagaaataattccacatt 268  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43015730 caatacattcacatatatagtactaaaaggttttgaatccaaaaatggagcagaatcaagttcaagaacaaacactgaaccaaagaaataattccacatt 43015829  T
Q  269 tgtgcaactctgaaaagaaagaaag 293  Q
    |||||||||||||||||||||||||    
T  43015830 tgtgcaactctgaaaagaaagaaag 43015854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 680 - 807
Target Start/End: Original strand, 12489526 - 12489652
Alignment:
Q  680 aggaaaaagatacatagaccaccatttgtgtacacac-tttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagtttgg 778  Q
    ||||||||||||||||||||||  ||  | ||||| | ||||||||||||||| |||||||||||||| |||||||||||  |||| |  ||||||||||    
T  12489526 aggaaaaagatacatagaccacttttaatatacacccctttgtaccactgctgatgtggcaggggtagtttggtaatttc--atgcaataggtagtttgg 12489623  T
Q  779 tagttttactcacaaccacacaattttct 807  Q
    || ||| ||||||||||||||||| ||||    
T  12489624 taatttcactcacaaccacacaatcttct 12489652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 43015885 - 43015931
Alignment:
Q  213 atggagcagaatcaagttcaagaacaaacactgaaccaaagaaataa 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  43015885 atggagcagaatcaagttcaagaacaaacactgaaccaaagaaataa 43015931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 175 - 374
Target Start/End: Original strand, 23735469 - 23735678
Alignment:
Q  175 attcacgtatatagcactaaaaggttttgaatccaaaaatgga------------gcagaatcaagttcaagaacaaacactgaaccaaagaaataattc 262  Q
    |||||||||||||| ||||||||||||||||||||||||||||            |||||||||||||||||||||||||| ||| |||| |||||||||    
T  23735469 attcacgtatatagtactaaaaggttttgaatccaaaaatggaaacaaaaattgagcagaatcaagttcaagaacaaacacggaatcaaataaataattc 23735568  T
Q  263 cacatttgtgcaactctgaaaagaaagaaagnnnnnnnnncacaaactgcacaagca-taaatgcttctg-aaataataaaatcaatgatggaaaatgaa 360  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||| |||| ||| ||||||||||||||| |||||||||    
T  23735569 cacatttgtgcaactctgaaaagaaagaaag--aaaaaaacacaaactgcacaagcattaaatgc-tctgaaaaaaataaaatcaatgat-gaaaatgaa 23735664  T
Q  361 gatgaaaattgaga 374  Q
    ||||||||||||||    
T  23735665 gatgaaaattgaga 23735678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 244 - 374
Target Start/End: Original strand, 18309765 - 18309893
Alignment:
Q  244 tgaaccaaagaaataattccacatttgtgcaactctgaaaagaaagaaagnnnnnnnnncacaaactgcacaagca-taaatgcttctg-aaataataaa 341  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||| |||| ||| ||||||    
T  18309765 tgaaccaaagaaataatttcacatttgtgcaactctgaaaagaaagaaag--aaaaaaacacaaactgcacaagcattaaatgc-tctgaaaaaaataaa 18309861  T
Q  342 atcaatgatggaaaatgaagatgaaaattgaga 374  Q
    ||||||||| |||||||||||||||||||||||    
T  18309862 atcaatgat-gaaaatgaagatgaaaattgaga 18309893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 18223269 - 18223335
Alignment:
Q  218 gcagaatcaagttcaagaacaaacactgaaccaaagaaataattccacatttgtgcaactctgaaaa 284  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||| ||||||||||| |||||||    
T  18223269 gcagaatcaagttgaacaacaaacactgaaccaaagaaaaaattccaaatttgtgcaacactgaaaa 18223335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 18309623 - 18309664
Alignment:
Q  15 aaaaacttcatcacaaaaattgcattcataattaacaagtat 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  18309623 aaaaacttcatcacaaaaattgcattcataattaacaagtat 18309664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 23735294 - 23735342
Alignment:
Q  15 aaaaacttcatcacaaaaattg-cattcataattaacaagtatccttca 62  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  23735294 aaaaacttcatcacaaaaattgacattcataattaacaagtatcattca 23735342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 679 - 785
Target Start/End: Original strand, 40499432 - 40499540
Alignment:
Q  679 taggaaaaagatacatagaccac-catttgtgtacacac-tttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagttt 776  Q
    ||||||||||||||||||||||| | ||| | ||| | | |||| |||||||||| |||||||||||||| ||| ||||||||   | ||||| ||||||    
T  40499432 taggaaaaagatacatagaccactcttttctatacgcccctttgcaccactgctgatgtggcaggggtagtttgataatttcacgcgatagggatagttt 40499531  T
Q  777 ggtagtttt 785  Q
    |||||||||    
T  40499532 ggtagtttt 40499540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 5e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 681 - 809
Target Start/End: Complemental strand, 33890571 - 33890447
Alignment:
Q  681 ggaaaaagatacatagaccaccatttgtgtacacactttgtaccactgctgttgtggcaggggtagattg--gtaatttcatatgctaggggtagtttgg 778  Q
    ||||||||||||||||||||||||||||||||||||||||||||      | ||||||||||||||||||  ||||||| ||||||||||||||||||||    
T  33890571 ggaaaaagatacatagaccaccatttgtgtacacactttgtacc------gatgtggcaggggtagattgtggtaattttatatgctaggggtagtttgg 33890478  T
Q  779 tagttttactcacaaccacacaattttcttc 809  Q
    ||||||||||||||||||||||||| |||||    
T  33890477 tagttttactcacaaccacacaattctcttc 33890447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 716 - 801
Target Start/End: Original strand, 35495337 - 35495422
Alignment:
Q  716 ctttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagtttggtagttttactcacaaccacacaa 801  Q
    ||||| |||||||||| ||||| |||||||| |||||||||||||    ||| |||||||||||||||| ||| ||||||||||||    
T  35495337 ctttgcaccactgctgatgtggtaggggtagtttggtaatttcatgcaatagaggtagtttggtagtttcacttacaaccacacaa 35495422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 745
Target Start/End: Complemental strand, 35596365 - 35596328
Alignment:
Q  708 tgtacacactttgtaccactgctgttgtggcaggggta 745  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  35596365 tgtacactctttgtaccactgctgatgtggcaggggta 35596328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 679 - 826
Target Start/End: Original strand, 31123245 - 31123390
Alignment:
Q  679 taggaaaaagatacatagaccaccatttgtgtacacac-tttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagtttg 777  Q
    |||||||||||||  ||||||||  | ||| ||||| | |||||| |||||||| |||||||| ||||| |||||||||||| |   |||||||||||||    
T  31123245 taggaaaaagataggtagaccactctatgtttacactcctttgtatcactgctgatgtggcagaggtagtttggtaatttcacacaataggggtagtttg 31123344  T
Q  778 gtagttttactcacaaccacacaattttcttctcttcctctcctctgtg 826  Q
    ||||||| | ||||||||||||||   |||||||||||| | |||||||    
T  31123345 gtagtttcattcacaaccacacaa---tcttctcttcctattctctgtg 31123390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 733 - 785
Target Start/End: Complemental strand, 29500413 - 29500361
Alignment:
Q  733 tgtggcaggggtagattggtaatttcatatgctaggggtagtttggtagtttt 785  Q
    |||||||||||||| ||||||||||||  || ||||| |||||||||||||||    
T  29500413 tgtggcaggggtagtttggtaatttcacgtgttagggatagtttggtagtttt 29500361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 678 - 818
Target Start/End: Complemental strand, 11361878 - 11361737
Alignment:
Q  678 ttaggaaaaagatacatagaccaccatttgtgtacacac-tttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagttt 776  Q
    ||||||||||||||||||||||||  ||  | | ||| | ||| ||||||||||| ||||||||||  || |||||| |||||     || |||||||||    
T  11361878 ttaggaaaaagatacatagaccacttttaatatccacccctttataccactgctgatgtggcagggacagtttggtagtttcacgcaatatgggtagttt 11361779  T
Q  777 ggtagttttactcacaaccacacaattttcttctcttcctct 818  Q
    | |||||| |||||||||||||||| ||||| | ||||||||    
T  11361778 gatagtttcactcacaaccacacaactttctccccttcctct 11361737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 745
Target Start/End: Complemental strand, 23899233 - 23899196
Alignment:
Q  708 tgtacacactttgtaccactgctgttgtggcaggggta 745  Q
    |||||||||||||||||||||||| |||||||||||||    
T  23899233 tgtacacactttgtaccactgctgatgtggcaggggta 23899196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 745
Target Start/End: Complemental strand, 23889632 - 23889595
Alignment:
Q  708 tgtacacactttgtaccactgctgttgtggcaggggta 745  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  23889632 tgtacactctttgtaccactgctgatgtggcaggggta 23889595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 745
Target Start/End: Complemental strand, 23893708 - 23893671
Alignment:
Q  708 tgtacacactttgtaccactgctgttgtggcaggggta 745  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  23893708 tgtacactctttgtaccactgctgatgtggcaggggta 23893671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 679 - 801
Target Start/End: Original strand, 23112121 - 23112241
Alignment:
Q  679 taggaaaaagatacatagaccaccatttgtgtacacactttgtaccactgctgttgtggcaggggtagattggtaatttcatatgctaggggtagtttgg 778  Q
    |||||||||||||||||||||||  | |   || || |||||||||||||||| ||||| |||||| | ||| ||||||||     ||| ||||||||||    
T  23112121 taggaaaaagatacatagaccac--tctcaatataccctttgtaccactgctgatgtggtaggggtggtttgataatttcacgcaatagaggtagtttgg 23112218  T
Q  779 tagttttactcacaaccacacaa 801  Q
    |||||| ||| ||||||||||||    
T  23112219 tagtttcacttacaaccacacaa 23112241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 745
Target Start/End: Original strand, 37877973 - 37878010
Alignment:
Q  708 tgtacacactttgtaccactgctgttgtggcaggggta 745  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  37877973 tgtacactctttgtaccactgctgatgtggcaggggta 37878010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University