View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11761_high_4 (Length: 791)

Name: NF11761_high_4
Description: NF11761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11761_high_4
NF11761_high_4
[»] chr5 (2 HSPs)
chr5 (18-773)||(2657411-2658140)
chr5 (346-479)||(28804413-28804546)
[»] chr2 (1 HSPs)
chr2 (566-762)||(16375392-16375587)
[»] chr7 (3 HSPs)
chr7 (346-481)||(3698310-3698445)
chr7 (484-667)||(3698082-3698265)
chr7 (346-407)||(3705148-3705209)
[»] chr1 (5 HSPs)
chr1 (566-662)||(47569331-47569427)
chr1 (566-649)||(24621565-24621648)
chr1 (566-665)||(28231704-28231803)
chr1 (566-640)||(23787227-23787301)
chr1 (566-667)||(28326529-28326630)
[»] chr4 (1 HSPs)
chr4 (429-481)||(8331735-8331787)
[»] chr8 (1 HSPs)
chr8 (520-638)||(27823832-27823949)


Alignment Details
Target: chr5 (Bit Score: 656; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 18 - 773
Target Start/End: Complemental strand, 2658140 - 2657411
Alignment:
Q  18 acattcagcttctgaactcgaagcataaggtcgggaattatggccggtgcctcttcgggtttggcaagttgagcattgatatatgctatctcatctgaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2658140 acattcagcttctgaactcgaagcataaggtcgggaattatggccggtgcctcttcgggtttggcaagttgagcattgatatatgctatctcatctgaga 2658041  T
Q  118 cattgtttggaactgacgcaacaggtgaaggagcagggacgatttcatcttccctaacgacaatggttttctgaagcgagaaatggaaatggtgggatat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2658040 cattgtttggaactgacgcaacaggtgaaggagcagggacgatttcatcttccctaacgacaatggttttctgaagcgagaaatggaaatggtgggatat 2657941  T
Q  218 atttattggattaacaagatatttcgtcaaaaagcttacttgtcattcataatcattcaaattaacatgtaaagtactccatcttattaaagttgataag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2657940 atttattggattaacaagatatttcgtcaaaaagcttacttgtcattcataatcattcaaattaacatgtaaattactccatcttattaaagttgataag 2657841  T
Q  318 gaataggagcgaaaatttccctctcatataaggataaattgttgaatgcagggtgaagggcttaaaatatgacatcttacgtttttgttaatagaaaacg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2657840 gaataggagcgaaaatttccctctcatataaggataaattgttgaatgcagggtgaagggcttaaaatatgacatcttacgtttttgttaatagaaaacg 2657741  T
Q  418 aagttcacggcttaaatattttgtattgaactatcatagttatcttattctaatcaatgaattacgtgcactgcagattgccaatgaatcaaaagatgac 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2657740 aagttcacggcttaaatattttgtattgaactatcatagttatcttattctaatcaatgaattacgtgcactgcagattgccaatgaatcaaaagatgac 2657641  T
Q  518 gattttactctcaggtgctgctataactcaattatatcccggcattgtagaggtgaaatctactaaaagagcagcaactgtgatgataagagataatgtc 617  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2657640 gattttactctcgggtgctgctataactcaattatatcccggcattgtagaggtgaaatctactaaaagagcagcaactgtgatgataagagataatgtc 2657541  T
Q  618 aaacctaatgatgctagttatcactctattattcatagactatacaaaggaagaacaagaaatgtttgttatgattaagattacacaaaagtacgtggat 717  Q
    |||||||||||||||||||||||||||||||                      |||| ||||||||||||||||||||||||||||||||    ||||||    
T  2657540 aaacctaatgatgctagttatcactctatta----------------------aacaggaaatgtttgttatgattaagattacacaaaa----gtggat 2657467  T
Q  718 gagttgaatgttgaacattataatcttgttacgaataaatatgatatcaaatgtgt 773  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2657466 gagttgaatgttgaacattataatcttgttacgaataaatatgatatcaaatgtgt 2657411  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 346 - 479
Target Start/End: Complemental strand, 28804546 - 28804413
Alignment:
Q  346 taaggataaattgttgaatgcagggtgaagggcttaaaatatgacatcttacgtttttgttaatagaaaacgaagttcacggcttaaatattttgtattg 445  Q
    |||||||||||||  |||||||||||    |  |||||||||| |||||||||||||| |||| | |||| | |||| | |||||||| ||||||||||     
T  28804546 taaggataaattgcagaatgcagggtatgtgttttaaaatatggcatcttacgtttttattaacataaaaggtagtttatggcttaaacattttgtattt 28804447  T
Q  446 aactatcatagttatcttattctaatcaatgaat 479  Q
    |||||| ||| ||||| |||| ||||||||||||    
T  28804446 aactatgataattatcatattataatcaatgaat 28804413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 566 - 762
Target Start/End: Original strand, 16375392 - 16375587
Alignment:
Q  566 agaggtgaaatctactaaaagagcagcaactgtgatgataagagataatgtcaaacctaatgatgctagttatcactctattattcatagactatacaaa 665  Q
    |||||| ||||||| |||||| ||||||  ||||||||||| || |  |||||||||||||| | |||||||||||||||||||  ||||||||||||||    
T  16375392 agaggtaaaatctaataaaagtgcagcacatgtgatgataaaaggtggtgtcaaacctaatgcttctagttatcactctattatcgatagactatacaaa 16375491  T
Q  666 ggaagaacaagaaatgtttgttatgattaagattacacaaaagtacgtggatgagttg---aatgttgaacattataatcttgttacgaataaatatgat 762  Q
    ||  || |||||| || ||||||||||||||||||||||||||   ||||||||||||     ||||||||||||||||||| ||| |||||||||||||    
T  16375492 gggggatcaagaagtg-ttgttatgattaagattacacaaaag---gtggatgagttgctacttgttgaacattataatcttattatgaataaatatgat 16375587  T

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Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 346 - 481
Target Start/End: Complemental strand, 3698445 - 3698310
Alignment:
Q  346 taaggataaattgttgaatgcagggtgaagggcttaaaatatgacatcttacgtttttgttaatagaaaacgaagttcacggcttaaatattttgtattg 445  Q
    ||||||||||| | |||||||| | |   |||||||||||| |||||||||  |||||||||| | |||| ||||||||||||||||  |||||||||||    
T  3698445 taaggataaatcgctgaatgcaagatagtgggcttaaaatacgacatcttatatttttgttaacaaaaaaggaagttcacggcttaacgattttgtattg 3698346  T
Q  446 aactatcatagttatcttattctaatcaatgaatta 481  Q
    |||||||||||||||||||||||||| |||||||||    
T  3698345 aactatcatagttatcttattctaattaatgaatta 3698310  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 484 - 667
Target Start/End: Complemental strand, 3698265 - 3698082
Alignment:
Q  484 tgcactgcagattgccaatgaatcaaaagatgacgattttactctcaggtgctgctataactcaattatatcccggcattgtagaggtgaaatctactaa 583  Q
    |||||| || |||| ||| |||||||||||||  | |||||||||||| |||| | |||||||| | ||||||  ||| || ||||||||||||| ||||    
T  3698265 tgcactacaaattgacaaggaatcaaaagatggtggttttactctcagatgcttccataactcagtcatatccaagcactgcagaggtgaaatctgctaa 3698166  T
Q  584 aagagcagcaactgtgatgataagagataatgtcaaacctaatgatgctagttatcactctattattcatagactatacaaagg 667  Q
    ||  | |||| || ||| ||||| || |  | |||||||| ||  | |||||||| |||||||||||  |||| |||| |||||    
T  3698165 aaatgtagcagctatgacgataaaaggttgtctcaaacctcattctactagttattactctattattggtagagtatataaagg 3698082  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 407
Target Start/End: Complemental strand, 3705209 - 3705148
Alignment:
Q  346 taaggataaattgttgaatgcagggtgaagggcttaaaatatgacatcttacgtttttgtta 407  Q
    |||||| |||| | ||||||||||||  ||| |||||||||||||||||||  |||||||||    
T  3705209 taaggacaaatcgctgaatgcagggtagaggtcttaaaatatgacatcttatatttttgtta 3705148  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 566 - 662
Target Start/End: Original strand, 47569331 - 47569427
Alignment:
Q  566 agaggtgaaatctactaaaagagcagcaactgtgatgataagagataatgtcaaacctaatgatgctagttatcactctattattcatagactatac 662  Q
    ||||||||||||| ||||| | |||||  || ||||||||| || || |||||||||||||| |||||||||||||||| |||||  ||||||||||    
T  47569331 agaggtgaaatctgctaaatgtgcagctgctttgatgataaaaggtagtgtcaaacctaatgctgctagttatcactctgttattggtagactatac 47569427  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 566 - 649
Target Start/End: Complemental strand, 24621648 - 24621565
Alignment:
Q  566 agaggtgaaatctactaaaagagcagcaactgtgatgataagagataatgtcaaacctaatgatgctagttatcactctattat 649  Q
    |||||||||||||  |||||| ||||||||| ||||||||| || |  |||||||||||||| |||| ||||||| ||| ||||    
T  24621648 agaggtgaaatctgttaaaagtgcagcaactttgatgataaaagctggtgtcaaacctaatgttgcttgttatcaatctgttat 24621565  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 566 - 665
Target Start/End: Original strand, 28231704 - 28231803
Alignment:
Q  566 agaggtgaaatctactaaaagagcagcaactgtgatgataagagataatgtcaaacctaatgatgctagttatcactctattattcatagactatacaaa 665  Q
    |||||||| |||| ||||||| | |||| || ||||||||| || |  |||||||||||| | ||||||||| |||||  ||||| || |||||||||||    
T  28231704 agaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatggactatacaaa 28231803  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 640
Target Start/End: Original strand, 23787227 - 23787301
Alignment:
Q  566 agaggtgaaatctactaaaagagcagcaactgtgatgataagagataatgtcaaacctaatgatgctagttatca 640  Q
    |||||||||||||  |||||| ||||||||| || |||||| || |  |||||||||||||| |||| |||||||    
T  23787227 agaggtgaaatctgttaaaagtgcagcaactttggtgataaaagctggtgtcaaacctaatgttgcttgttatca 23787301  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 667
Target Start/End: Original strand, 28326529 - 28326630
Alignment:
Q  566 agaggtgaaatctactaaaagagcagcaactgtgatgataagagataatgtcaaacctaatgatgctagttatcactctattattcatagactatacaaa 665  Q
    ||||||||||||| ||||||| | || | |||| ||||||| || |  | ||| |||||||| |||||||||||||||  ||||| ||||| | ||||||    
T  28326529 agaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactcggttattgatagattgtacaaa 28326628  T
Q  666 gg 667  Q
    ||    
T  28326629 gg 28326630  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 8331735 - 8331787
Alignment:
Q  429 ttaaatattttgtattgaactatcatagttatcttattctaatcaatgaatta 481  Q
    |||||||||||||||||||||||||||||||| || || ||||||||||||||    
T  8331735 ttaaatattttgtattgaactatcatagttattttgttgtaatcaatgaatta 8331787  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 520 - 638
Target Start/End: Original strand, 27823832 - 27823949
Alignment:
Q  520 ttttactctcaggtgctgctataactcaattatatcccggcattgtagaggtgaaatctactaaaagagcagcaactgtgatgataagagataatgtcaa 619  Q
    ||||||||||| |||||| ||||||||||| ||||||  ||| |  | | |||||| |||||||||| ||||||| |||||| |||| || |  ||||||    
T  27823832 ttttactctcaagtgctgttataactcaatcatatccaagcactacaaatgtgaaaactactaaaagtgcagcaattgtgatcataaaag-tggtgtcaa 27823930  T
Q  620 acctaatgatgctagttat 638  Q
    |||||||| ||||||||||    
T  27823931 acctaatgttgctagttat 27823949  T

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