View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11761_low_1 (Length: 1059)
Name: NF11761_low_1
Description: NF11761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11761_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 18 - 636
Target Start/End: Original strand, 42777001 - 42777636
Alignment:
| Q |
18 |
gtttgtaaaattaatagttgaactatatgatgaatatgaaataacataaaaagtatatttattaattaacatttgagttcaaatagcaacgatataattg |
117 |
Q |
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| T |
42777001 |
gtttgtaaaattaatagttgaactatacgatgaatatgaaataacataaaa-gtatatttattaattaacatttcagttcaaatagcaacgatataattg |
42777099 |
T |
|
| Q |
118 |
aaagaaaacgataagatatatgctacaagttcaaacactaagcgagtnnnnnnntagaagttcctgtataaagaaa-ccagagaaatttgtaaatgtgga |
216 |
Q |
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| T |
42777100 |
aaagaaaacgataagatatatgctacaagttcaaacactaagcgagtaaaaaaatagaagttcctgtataaagaaaaccagagaaatttgtaaatgtgga |
42777199 |
T |
|
| Q |
217 |
atcattattgaatgaattgactaaaattgagttcaagcacttgtatatatagcgggaactaactgaaattaagctaacaacttcatacctgctttttaac |
316 |
Q |
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| T |
42777200 |
atcattattgaatgaattgactaaaattgagttcaagcacttgtatatatagcgggaactaactgaaattaagctaacaacttcatacctgc-ttttaac |
42777298 |
T |
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| Q |
317 |
taaatttaactaactaatggctatcaaattgaactatggt------------------taacttgaacttcaagtaattgagtctaataccctccctccc |
398 |
Q |
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| T |
42777299 |
taaatttaactaactaatggctatcaaattgaactatggttacataactaactatgtctaacttgaacttcaagtaattgagtctaataccctccctccc |
42777398 |
T |
|
| Q |
399 |
cgcaacgtggagcttgtacattaaacatgcctagtttgaaaggaagcctctaaaagggagcaaattcaagttccttgatgaaaaagtcggtcaatagatt |
498 |
Q |
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| T |
42777399 |
cgcaacgtggagcatgtacattaaacatgcctagtttgaaaggaagcctctaaaagggagcaaattcaagttccttgatgaaaaagtcggtcaatagatt |
42777498 |
T |
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| Q |
499 |
catataggtgatagtaagaagatggacaaaaatgtgtgcaacttctcacgaactatgtgacaaccaacgccaatatgcttggtgcgctcatgaaatgttg |
598 |
Q |
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| T |
42777499 |
catataggtgatagtaagaagatggaaaaaaatgtgtgtaacttctcacgaactatgtgacaaccaacgccaatatgcttggtgcgctcatgaaatgtag |
42777598 |
T |
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| Q |
599 |
gatccaaagcaatgtgtttgtcagataaaatatctaaa |
636 |
Q |
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| T |
42777599 |
gatccaaagcaatgtgtttgtcagataaaatatctaaa |
42777636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 619 - 1047
Target Start/End: Original strand, 42777737 - 42778168
Alignment:
| Q |
619 |
tcagataaaatatctaaatcatatttcctttgattcaaaatgatacatttgtgaagttgagccaattccaaaccaaagatgtatttcaaggagcctaag- |
717 |
Q |
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| T |
42777737 |
tcagataaaatatctaaatcatatttcctttgattcaaaatgatacatttgtgaagttgagccaattccaaaccaccgatgtatttcaaggagcctaaga |
42777836 |
T |
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| Q |
718 |
--tccttaattttgaatttgtcatcaagaaggagtttaactgaatctatatatgaaagggatgttcctgtgagtatgacatcatctacataaatcgtcaa |
815 |
Q |
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| T |
42777837 |
cctccttaattttgaatttgtcatcaagaaggagtttaactgaatctatatatgaaatggatgttcctgtgagcatgacatcatctacataaaccgtcaa |
42777936 |
T |
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| Q |
816 |
cgttgtaaagatagtagaagtccttcttgtgaataaggaatgatgtgatttggattgaatgaaacaaattgagattagaaaactagatggttaggagaac |
915 |
Q |
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| T |
42777937 |
cgttgtaaagatagtagaagttcttcttatgaataaggaatgatgtgatttggattgaatgaaacaaattgagattagaaaactagatggttaggagaac |
42778036 |
T |
|
| Q |
916 |
cattggtgacttgcttgttttaaaccataagagatttcagtaatctgcaaacttgactaggatttgaggaagtcacaccaagaggaagctttatataaac |
1015 |
Q |
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| T |
42778037 |
cattggtgacttgcttgttttaaaccataagagatttcagtaatctgcaaacttgaataggatttgaggaagtcacaccaagaggaagctttatataaac |
42778136 |
T |
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| Q |
1016 |
ctcttcattattgttgtgtgtatccctttgct |
1047 |
Q |
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| T |
42778137 |
ctcttcattattgttgtgtgtatccctttgct |
42778168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 16588223 - 16588157
Alignment:
| Q |
24 |
aaaattaatagttgaactatatgatgaatatgaaataacataaaaagtatatttattaattaacattt |
91 |
Q |
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| T |
16588223 |
aaaattaacagttaaactaatcgatgaatatgaaatgacataaaaagtata-ttattaattaatattt |
16588157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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