View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11761_low_12 (Length: 396)
Name: NF11761_low_12
Description: NF11761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11761_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 28313382 - 28312981
Alignment:
| Q |
1 |
caaatcaatttcatgagagaggctaattttagttccattcaaggaacttacatctacatttaactggtgtgaaagtgcctcgtaactaacggtagcaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28313382 |
caaatcaatttcatgagagaggctaattttagttccattcaaggaacttaaatctacatttaactggtgtgaaagtgcctcgtaactaacggtagcaacc |
28313283 |
T |
|
| Q |
101 |
accggagttaaaaagttcacaacattgtcaattccccattttaccattgttaccgaactacttgaatttacataaatacccacatgcgcaactgtatggt |
200 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28313282 |
accggtgttaaaaagttcacaacgttgtcaattccccattttaccattgttaccgaactacttgaatttacataaatacccacatgcgcaactgtatggt |
28313183 |
T |
|
| Q |
201 |
ccagctcattttgaaaggtgtcgaattcaactgcaacaatttgattttgaaaggtattaaaaacagtctcgggactcacaagaccaagatatc------- |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28313182 |
ccagctcattttgaaaggtgtcgaattcaactgcaacaatttgattttgaaaggtattaaaaacagtctcgggactcacaagaccaagatacccatcact |
28313083 |
T |
|
| Q |
294 |
---aga-------atcttcgagtgatatggtgcaatgaaaaatgaaactccaacaccaggactttgttcattcgatgtaacaagaaaagagaatgtggtt |
383 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28313082 |
cgaagattctgatatcttcgagtgatatggtgcaatgaaaaatgaaactccaacaccaggactttgttcattcgatgtaacaagaaaagagaatgtggtt |
28312983 |
T |
|
| Q |
384 |
gt |
385 |
Q |
| |
|
|| |
|
|
| T |
28312982 |
gt |
28312981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 92 - 291
Target Start/End: Complemental strand, 28316431 - 28316232
Alignment:
| Q |
92 |
gtagcaaccaccggagttaaaaagttcacaacattgtcaattccccattttaccattgttaccgaactacttgaatttacataaatacccacatgcgcaa |
191 |
Q |
| |
|
||||||||||||| ||||||| ||| || || | |||||||||||| || || || || ||||| | | ||||||| || |||||||||||||||| |
|
|
| T |
28316431 |
gtagcaaccaccgttgttaaaacgttatcaccactctcaattccccatctttccgtttgtagcgaacgaatggaatttatattaatacccacatgcgcat |
28316332 |
T |
|
| Q |
192 |
ctgtatggtccagctcattttgaaaggtgtcgaattcaactgcaacaatttgattttgaaaggtattaaaaacagtctcgggactcacaagaccaagata |
291 |
Q |
| |
|
|| ||||| ||||||| ||| || || |||||||| ||||||||||||||||||| | |||||||| ||||||| ||||| | ||| |||||||| |
|
|
| T |
28316331 |
atggtgggtcccactcatttgcaaacgtatcaaattcaacggcaacaatttgattttgaaggctattaaaagcagtctcaggactgaaaaggccaagata |
28316232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 247
Target Start/End: Complemental strand, 28320747 - 28320583
Alignment:
| Q |
83 |
taactaacggtagcaaccaccggagttaaaaagttcacaacattgtcaattccccattttaccattgttaccgaactacttgaatttacataaataccca |
182 |
Q |
| |
|
|||||||| ||||||||||||| | |||| | || ||||| | |||||||||||| | || ||||| | |||| | |||||| ||| |||||||| |
|
|
| T |
28320747 |
taactaactgtagcaaccaccgttgataaattgctctcaacactatcaattccccatctctccgttgtttcggaacggatggaatttgcattaataccca |
28320648 |
T |
|
| Q |
183 |
catgcgcaactgtatggtccagctcattttgaaaggtgtcgaattcaactgcaacaatttgattt |
247 |
Q |
| |
|
|||||||| || ||||| ||||||| ||| || ||||||||||||||||||||||||||| |
|
|
| T |
28320647 |
catgcgcatatggtgggtcccactcatttgcaaacgtatcgaattcaactgcaacaatttgattt |
28320583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 28320466 - 28320425
Alignment:
| Q |
344 |
actttgttcattcgatgtaacaagaaaagagaatgtggttgt |
385 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
28320466 |
actttgtccatttgatgttacaagaaaagagaatgtggttgt |
28320425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University