View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11761_low_15 (Length: 344)
Name: NF11761_low_15
Description: NF11761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11761_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 49418342 - 49418171
Alignment:
| Q |
1 |
caagactgagaatttgatcaatcaaaggcatatgattgagcaagttaaggccttctttctctttatttgctatccagaaatcagaccaaatagactacta |
100 |
Q |
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| T |
49418342 |
caagactgagaatttcatcaatcaaaggcatatgattgagcaagttaaggccttctttctctttatttgctatccagaaatcagaccaaatagactacta |
49418243 |
T |
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| Q |
101 |
aatttgagattgttaccattaaaccaaaatcatgactttaagactttaatgaggggcataaaggagctttac |
172 |
Q |
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| T |
49418242 |
aatttgagattgttaccattaaaccaaaatcatgactttaagactttaatgaggggcataaaggagctttac |
49418171 |
T |
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Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 49418154 - 49418023
Alignment:
| Q |
197 |
gcactcgtgaaatatggaatgaatcaaaaggtaattttgagttacaacatcctcgtattaatacttctttgaaaaatatttgttttgttggatagcgaag |
296 |
Q |
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| T |
49418154 |
gcactcgtgaaatatggaacaaatcaaaaggtaattttgagttacaacatcctcgtattaatacttctttgaaaaatatttgttttgttggatagcgaag |
49418055 |
T |
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| Q |
297 |
ttggcattatcttacatgtttttctaatagag |
328 |
Q |
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| T |
49418054 |
ttggcattatcttacatgtttttctaatagag |
49418023 |
T |
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