View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11761_low_24 (Length: 213)
Name: NF11761_low_24
Description: NF11761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11761_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 38301054 - 38301234
Alignment:
| Q |
15 |
gatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgcgacttgttaagtgttcccattacca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38301054 |
gatgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgcgacttgttaagtgttcccattacca |
38301153 |
T |
|
| Q |
115 |
ccgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtgg |
195 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38301154 |
ccgtcgcttccgattttgagttttgcatgggctcacgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtgg |
38301234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 38306955 - 38307134
Alignment:
| Q |
16 |
atgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgcgacttgttaagtgttcccattaccac |
115 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
38306955 |
atgaagatatggatgtattacaatggtggaagagtaataatgatcgatatccagatctatcaatactggcttgtgacttgttaagtgttcccattaccac |
38307054 |
T |
|
| Q |
116 |
cgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtgg |
195 |
Q |
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|| ||||| |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
38307055 |
tgtggcttctgattttgaattttgcatgggctcacgcgtgtttaacaagtataaagatcgtatgttgccgatggatgtgg |
38307134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 38309697 - 38309865
Alignment:
| Q |
16 |
atgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgcgacttgttaagtgttcccattaccac |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||| |
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| T |
38309697 |
atgaagatatggatgtattacagtggtggaagagaaataataatcgatttccggatctatcaattctggcctgcgacttgttaagttttcccattaccac |
38309796 |
T |
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| Q |
116 |
cgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgcc |
184 |
Q |
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||||| || |||||||||||||||||||||||| | || |||||||| |||||||||||||||||||| |
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| T |
38309797 |
tgtcgcatctgattttgagttttgcatgggctcacgtgtgtttaacaaatataaagatcgtatgttgcc |
38309865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 38314298 - 38314477
Alignment:
| Q |
16 |
atgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgcgacttgttaagtgttcccattaccac |
115 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38314298 |
atgaagatatggatgtattacaatggtggaagagtaattcaaatcgatttccagatctatcaatattggcttgcgacttgttaagtgttcccattgccac |
38314397 |
T |
|
| Q |
116 |
cgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtgg |
195 |
Q |
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|| ||||| |||||||| ||||||||||||||| | || || ||||||||||||||||| ||||| || ||| |||||| |
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| T |
38314398 |
agtggcttctgattttgaattttgcatgggctcacgtgtgttaaacaagtataaagatcgcatgttaccaatggatgtgg |
38314477 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 38317708 - 38317887
Alignment:
| Q |
16 |
atgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgcgacttgttaagtgttcccattaccac |
115 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
38317708 |
atgaagatatggatgtattacaatggtggaagagaaataataatcgatttccggatctatcaatattagcttgcgacttgttaagtgttcccattgccac |
38317807 |
T |
|
| Q |
116 |
cgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtgg |
195 |
Q |
| |
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|| ||||| |||| ||| ||||||||||| ||| | ||||||||||||||| ||||||||| | |||| | |||||||| |
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| T |
38317808 |
tgttgcttctgattctgaattttgcatgggttcacgtgtctttaacaagtatgaagatcgtacgctgcccacgaatgtgg |
38317887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 38321797 - 38321972
Alignment:
| Q |
16 |
atgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgcgacttgttaagtgttcccattaccac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| ||| ||| |
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| T |
38321797 |
atgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctttcaatattggctcgagacttgttaagtgttcccgttaacac |
38321896 |
T |
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| Q |
116 |
cgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaat |
191 |
Q |
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||||||| ||||| || |||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| |
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| T |
38321897 |
tatcgcttctgatttggatttttgcataggcttgcacgtttttaacaagtataaagatcgtatgttaccgatgaat |
38321972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 38326509 - 38326688
Alignment:
| Q |
16 |
atgaagatatggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgcgacttgttaagtgttcccattaccac |
115 |
Q |
| |
|
||||||| |||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| |
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| T |
38326509 |
atgaagacatggatgtattagaatggtggaagagtaattataattgatttccagatctatcaattttggcttgtgacttgttaagtgttcccattgccac |
38326608 |
T |
|
| Q |
116 |
cgtcgcttccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtgg |
195 |
Q |
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||||| || ||||| || ||||||||||| || |||| ||| | ||||||||||| | |||| |||| |||||||||| |
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| T |
38326609 |
tgtcgcatctgatttggaattttgcatgggtgcacgcgtatttgaaaagtataaagaccttatgctgcctatgaatgtgg |
38326688 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 38849620 - 38849449
Alignment:
| Q |
24 |
atggatgtattacagtggtggaagagtaataataatcgatttccagatctatcaatattggcttgcgacttgttaagtgttcccattaccaccgtcgctt |
123 |
Q |
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|
|||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||| || | || |||| |
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| T |
38849620 |
atggatgtattacaatggtggaagagtaataatgatcgatttccggatctatcaatattggcctgcgacttgttaagtgttcccattgccgctgtagctt |
38849521 |
T |
|
| Q |
124 |
ccgattttgagttttgcatgggctcatgcgtctttaacaagtataaagatcgtatgttgccgatgaatgtgg |
195 |
Q |
| |
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| |||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38849520 |
ctgattctgaattttgcatgggctcacgtgtctttaacaagtataaagatcgtatgttgccgatgaatgtgg |
38849449 |
T |
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