View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11761_low_5 (Length: 482)
Name: NF11761_low_5
Description: NF11761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11761_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 16654236 - 16654586
Alignment:
| Q |
17 |
agttctcatccatttaaacaacagatataaaaattgggaatagtgttttaacataattgaaggaattgctcgaagatactaaactacaaataatacatag |
116 |
Q |
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| T |
16654236 |
agttctcatccatttaaacaacagatgtaaga-ttgggaatagtgttttaacatagttgaaggaattgctcgaagattctaaactacacataatacaaag |
16654334 |
T |
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| Q |
117 |
aaacgtgaaggcaagtatacgccttcctttttgtccaaaaatgttagagtttggaatggctagaatatttcattgctttataatgagattccagacaatg |
216 |
Q |
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| T |
16654335 |
aaacgtgaaggcaaatatacgccttcctttttgtccaagaatgttagagtttggaatggctaaaatatttcaatgctttataatgagattccagacagtg |
16654434 |
T |
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| Q |
217 |
ttctctatcaatgaaattagaaattgtcagctactcggttgttctccaaccgcgaggttacaatgtcgtcttttgaagagagatagttataaaaattata |
316 |
Q |
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| T |
16654435 |
ttctctatcagtgaaattagacattgtcagctactcagttgttctccatccgtgaggttacaatgtcgtcttttgaagagagaaagttataaaaattata |
16654534 |
T |
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| Q |
317 |
aaatattattcatataatgtactctcgaaaa--atgtgttgttatagatgtgtaaat |
371 |
Q |
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| T |
16654535 |
aaatattat-----caacgtactctcgaaaaatatgtgattttatagatgtgtaaat |
16654586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 215 - 466
Target Start/End: Complemental strand, 16871927 - 16871673
Alignment:
| Q |
215 |
tgttctctatcaatgaaattagaaattgtcagctactcggttgttctccaaccgcgaggttacaatgtcgtcttttgaagagagatagttataaaaatta |
314 |
Q |
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| T |
16871927 |
tgttctccatcagtgaaattagacactgtcagctactcaattgttctcgatccgtgaggttacaatgtcaacttttgaaggcagatagttataaaaatta |
16871828 |
T |
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| Q |
315 |
taaaatattattcatataatgtactctcgaaaaatgt--gttgttatagatgtgtaaatt----aatcaatattagtataatagatagtactaaagttga |
408 |
Q |
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| T |
16871827 |
tataatattattcgtttaacgtactctcgaaaaatattagtttttatagatgtgtaaattggagaatcaatattagtataatacatagtacataagttga |
16871728 |
T |
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| Q |
409 |
gatgatcagtgcagaagaatcatgtacaaacctgattgcgtacgcgtgggggaaaata |
466 |
Q |
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| T |
16871727 |
gatggttagtgc---agaattatgtacaaacctgcaggtgtacgcgttggggaaaata |
16871673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 424 - 467
Target Start/End: Original strand, 16784081 - 16784124
Alignment:
| Q |
424 |
agaatcatgtacaaacctgattgcgtacgcgtgggggaaaatat |
467 |
Q |
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| T |
16784081 |
agaatcatgtacaaacctgtttgcgtaggcgtgggggaaaatat |
16784124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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