View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11761_low_6 (Length: 467)
Name: NF11761_low_6
Description: NF11761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11761_low_6 |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 20 - 458
Target Start/End: Complemental strand, 32481548 - 32481109
Alignment:
| Q |
20 |
catgttgaatatgaagatagtaaagaataatggagagatgctaaagttggagagagagcaagatcttcgaaaaaggccactcactatttctactgaaata |
119 |
Q |
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| T |
32481548 |
catgttgaatatgaagatagtaaagaataatggagagatgctaaagttggagagagagcaagatcttcgaaaaaggccactcactatttctactgaaata |
32481449 |
T |
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| Q |
120 |
tttgagtttgctccatctttctatttggttgagataaagaagtacagtggagatgcatcggaataccagaagatattgaaggagcatataataccagctc |
219 |
Q |
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| T |
32481448 |
tttgagtttgctccatctttctatttggttgagataaagaagtacagtggcgatgcatcggaataccagaagatattgaaggagcatataataccagttc |
32481349 |
T |
|
| Q |
220 |
tcaaagatatcgtctggatttggcaaagtgagnnnnnnncacaacactagccagccggtgtccagtcctgaagaggttctttgatttgaaattttgaatt |
319 |
Q |
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| T |
32481348 |
tcaaagatatcatctggatttggcaaagtgagaaaaaaacacaacactagccagccggtgtccagtcctgaagaggttcattgatttgaaattttgaatt |
32481249 |
T |
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| Q |
320 |
gcttgcgtcagtaataaattttagtttgatgattgatattttgatgtttagatcgaaaatttcaataagttttgtgtccttgtaatatac-tttttcttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |
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| T |
32481248 |
gcttgcgtcagtaataaattttagtttgatgattgatattttgatgtttagatcgaaaatttcaataagtcttgtgtacttgtaatatacttttttcttt |
32481149 |
T |
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| Q |
419 |
ggtattagtccttgaataaggcttatttgattgttctgtg |
458 |
Q |
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| T |
32481148 |
ggtattagtccttgaataaagcttatttgattgttctgtg |
32481109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 137 - 251
Target Start/End: Complemental strand, 12728326 - 12728212
Alignment:
| Q |
137 |
tttctatttggttgagataaagaagtacagtggagatgcatcggaataccagaagatattgaaggagcatataataccagctctcaaagatatcgtctgg |
236 |
Q |
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||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| | |
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| T |
12728326 |
tttctattttgttgagataatgaagtaccatggagatgcatcggaataccagaagatattgaaggaacatataataccagctctcaaagacattgtctag |
12728227 |
T |
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| Q |
237 |
atttggcaaagtgag |
251 |
Q |
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| T |
12728226 |
atttggcaaagtgag |
12728212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 46970904 - 46971131
Alignment:
| Q |
24 |
ttgaatatgaagatagtaaagaataatggagagatgctaaagttggagagagagcaagatcttcgaaaaaggccactcactatttctactgaaatatttg |
123 |
Q |
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||||| |||||||||||||||||||||||||||||| | ||||| |||||| ||| ||||||| |||| |||| || || |||||| |||||||||| | |
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| T |
46970904 |
ttgaagatgaagatagtaaagaataatggagagatgttgaagttagagagactgcaggatcttccaaaagggccgcttaccatttctgctgaaatattcg |
46971003 |
T |
|
| Q |
124 |
agtttgctccatctttctatttggttgagataaagaagtacagtggagatgcatcggaataccagaagatattgaaggagcatataataccagctctcaa |
223 |
Q |
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| T |
46971004 |
agtttgctccatctttctttttggtcgagttaaagaagtcgtgtggtgatgcattggactaccataagatattgaatgaacacataagaccagctctcaa |
46971103 |
T |
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| Q |
224 |
agatatcgtctggatttggcaaagtgag |
251 |
Q |
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| T |
46971104 |
agatattgtttggatttggcatagtgag |
46971131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 46972124 - 46972196
Alignment:
| Q |
129 |
gctccatctttctatttggttgagataaagaagtacagtggagatgcatcggaataccagaagatattgaagg |
201 |
Q |
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| T |
46972124 |
gctccgtctttttatttggttgagataaagaagtcttgtggtgatgcatcgaactaacataagatattgaagg |
46972196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 13212 - 13254
Alignment:
| Q |
209 |
aataccagctctcaaagatatcgtctggatttggcaaagtgag |
251 |
Q |
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| T |
13212 |
aataccagctctcaaagacattgtctggatttggcaaagtgag |
13254 |
T |
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