View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11761_low_8 (Length: 460)
Name: NF11761_low_8
Description: NF11761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11761_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 5 - 445
Target Start/End: Original strand, 27971261 - 27971701
Alignment:
| Q |
5 |
atgcaaatgattgttagactttgagaagttgacatagttaacatttctatctaatttgttattaacctgcaattactataaatttgtccataaatatatg |
104 |
Q |
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| T |
27971261 |
atgcaaatgattgttagaatttgagatgctgacatagttaacatttctatctaatttgttcttaacctgcaattactataaatttgtccataaatatatg |
27971360 |
T |
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| Q |
105 |
taataatacaggctcatattacttaaagaaacaaactcaaatagcttaatcgaagcatgcccaacgtacaaatgcagaactacacacactaaacacactg |
204 |
Q |
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| T |
27971361 |
taataatacaggctcatattacttaaagaaacaaactcaaatagcttaatctaagcatacccaacgtacaaatgcagaactacacacactaaacacactg |
27971460 |
T |
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| Q |
205 |
caatagtgcacgtatatttattccaatatgtgtgatgaacagtggatctcttaaaatttgaagtcaacaccttgaatgctgcttagtatatagatttcag |
304 |
Q |
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| T |
27971461 |
caatagtgcacatatatttattccaatatgtgtgatgaacagtggatctcttaaaatttgaagtcaacaccttgaatgctgcttagtatatagatttcag |
27971560 |
T |
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| Q |
305 |
tacaaacacttgtgtaaatttcatgttgcatatgtttaatcataacggaactttgaagttagacaagctcacatcagcagtctcaaatttctaggatgtt |
404 |
Q |
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| T |
27971561 |
tacaaacacttgtgtaaatttcatgttgcatatgtttaatcataacggaattttgaagttagacgagctcacatcagcagtctcaaatttctaggatgtt |
27971660 |
T |
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| Q |
405 |
ttaaatcttcaaatgggttgcaccaactaacaagacataag |
445 |
Q |
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| T |
27971661 |
ttaaatcttcaaatgggttgcaccaactaacaagacataag |
27971701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 273
Target Start/End: Original strand, 27970233 - 27970327
Alignment:
| Q |
179 |
cagaactacacacactaaacacactgcaatagtgcacgtatatttattccaatatgtgtgatgaacagtggatctcttaaaatttgaagtcaaca |
273 |
Q |
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| T |
27970233 |
cagaactaaacaaattaaccacactgcaatactacaaatatatttcttccaatatgtatggtgaataccggatctcttaaaatttaaattcaaca |
27970327 |
T |
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