View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11761_low_9 (Length: 441)
Name: NF11761_low_9
Description: NF11761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11761_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 44851477 - 44851894
Alignment:
| Q |
1 |
tcattatagaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctatgcaca |
100 |
Q |
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| T |
44851477 |
tcattatagaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctatgcaca |
44851576 |
T |
|
| Q |
101 |
gttaaagaatatgtcagcatctaaatcagaagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacgaggagc |
200 |
Q |
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| T |
44851577 |
gttaaagaatatgtcagcatctaaatcagaagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacgaggagc |
44851676 |
T |
|
| Q |
201 |
attttttctgatgaaaggattcctgttgccccttcttgattgattcaagtgnnnnnnnnnnatgtgtctgttgtctagaagaatgtaacaaaatgtattg |
300 |
Q |
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| T |
44851677 |
attttttctgatgaaaggattcctgttgccccttcttgattgatt----------ttttttatgtgtctgttgtctagaagaatgtaacaaaatgtattg |
44851766 |
T |
|
| Q |
301 |
ttcatatatcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctatttcccacctttatttatatccatccctta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44851767 |
ttcatatatcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctatttcccacctttatttatatccatcccata |
44851866 |
T |
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| Q |
401 |
ctgacacgcaatactacgtccctaccct |
428 |
Q |
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| T |
44851867 |
ctgacacgcaatactacgtccctaccct |
44851894 |
T |
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