View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11762_high_10 (Length: 335)
Name: NF11762_high_10
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11762_high_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 14582911 - 14582593
Alignment:
| Q |
17 |
accttactcatctgcagaaactgaaacaagaacagactctagtcagctgcaaattgagtgaattgaagtacatcataaagttggcaacttctcaaaggaa |
116 |
Q |
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| T |
14582911 |
accttactcatctgcagaaactgaaacaagaacagactctagtcagctgcaaattgagtgaattgaagtacatcataaagttggcaatttctcaaaggaa |
14582812 |
T |
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| Q |
117 |
gacaacaccatctttatgtttattattacattctactgcaagaaaataactataacaatctacgaagcacaaacacaggcacgggacgcgccttcaatct |
216 |
Q |
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| T |
14582811 |
gacaacaccatctttatgtttattattacattctactgcaagaaaataactataacaatctacgaagcacaaacacaggcacgggacgcgccttcaatct |
14582712 |
T |
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| Q |
217 |
aaagtgtcagtgctacatagatagagtgattgatacatagccattaagactccaaaaaggaatccattgcctttttgtgacttgccggtttgccatgcta |
316 |
Q |
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| T |
14582711 |
aaagtgtcagtgctacatagatagagtgattgatacatagccattaagactccaaaaaggaatccattgcctttttgtgacttgccggtttgccatgcta |
14582612 |
T |
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| Q |
317 |
taacaaaagcttctgatcc |
335 |
Q |
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| T |
14582611 |
taacaaaagcttctgatcc |
14582593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 235
Target Start/End: Original strand, 37084164 - 37084194
Alignment:
| Q |
205 |
cgccttcaatctaaagtgtcagtgctacata |
235 |
Q |
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| T |
37084164 |
cgccttcaatctaaagtgtcagtgctacata |
37084194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 11818256 - 11818224
Alignment:
| Q |
206 |
gccttcaatctaaagtgtcagtgctacatagat |
238 |
Q |
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| T |
11818256 |
gccttcaatctgaagtgtcagtgctacatagat |
11818224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 17519097 - 17519125
Alignment:
| Q |
208 |
cttcaatctaaagtgtcagtgctacatag |
236 |
Q |
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| T |
17519097 |
cttcaatctaaagtgtcagtgctacatag |
17519125 |
T |
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