View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11762_high_11 (Length: 335)

Name: NF11762_high_11
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11762_high_11
NF11762_high_11
[»] chr1 (2 HSPs)
chr1 (13-318)||(12125399-12125699)
chr1 (17-124)||(18955288-18955396)
[»] chr5 (3 HSPs)
chr5 (44-126)||(36537641-36537723)
chr5 (13-103)||(23156873-23156963)
chr5 (81-125)||(18763816-18763860)
[»] chr4 (6 HSPs)
chr4 (46-183)||(17274706-17274849)
chr4 (24-138)||(8461879-8461994)
chr4 (13-139)||(15848831-15848958)
chr4 (69-181)||(23333496-23333614)
chr4 (81-125)||(200075-200119)
chr4 (50-133)||(12708345-12708428)
[»] chr3 (2 HSPs)
chr3 (14-139)||(28733617-28733742)
chr3 (44-133)||(16242067-16242156)
[»] chr8 (2 HSPs)
chr8 (81-183)||(31692226-31692333)
chr8 (13-87)||(31634081-31634156)
[»] chr2 (1 HSPs)
chr2 (39-135)||(21715872-21715969)
[»] chr7 (1 HSPs)
chr7 (14-115)||(4876798-4876898)
[»] chr6 (1 HSPs)
chr6 (105-138)||(21513243-21513276)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 12125699 - 12125399
Alignment:
Q  13 gatgaactagaaaaactccctatcttgtaggggagaaaagaaagcttcttgtgtcatttggagctttaagcacctcaaatttcttgaaagaatcaaacca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  12125699 gatgaactagaaaaactccctatcttgtaggggagaaaagaaagcttcttgtatcatttggaactttaagcacctcaaatttcttgaaagaatcaaacca 12125600  T
Q  113 ttatacaacctaaaattgtccctctaagtccaaattctcacaaagaactataaaggaagtgttttcttatgnnnnnnnnagagaaggggagtaagagtga 212  Q
    ||| ||||||||  ||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||        ||   ||| |||| |||| ||    
T  12125599 ttacacaacctactattgatcctctaggtccaaattctcacaaagaactataaaggaagtgttttcttatg-tttttttag---aggtgagt-agagaga 12125505  T
Q  213 agcaatgaatgaatccagtgaataggtcaaatgaaagaaacatgtttttctagtgtgattgattaatgcaaaagaaatcagattttaagtgaaaatacat 312  Q
     | ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12125504 cgtaatgaatgaattcagtgaataggtcaaatgaaagaaacatatttttctagtgtggttgattaatgcaaaagaaatcagattttaagtgaaaatacat 12125405  T
Q  313 tgtctc 318  Q
    ||||||    
T  12125404 tgtctc 12125399  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 18955396 - 18955288
Alignment:
Q  17 aactagaaaaactccctatcttgtaggggagaaaagaaagc-ttcttgtgtcatttggagctttaagcacctcaaatttcttgaaagaatcaaaccatta 115  Q
    |||||||||||  ||||| ||||||   | ||||||||||| |||||||||| |||||| |||| ||||||||||||||||| ||| | ||||| |||||    
T  18955396 aactagaaaaatcccctagcttgtaaaagtgaaaagaaagccttcttgtgtcctttggaactttgagcacctcaaatttcttaaaatattcaaatcatta 18955297  T
Q  116 tacaaccta 124  Q
     ||||||||    
T  18955296 cacaaccta 18955288  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 36537641 - 36537723
Alignment:
Q  44 ggagaaaagaaagcttcttgtgtcatttggagctttaagcacctcaaatttcttgaaagaatcaaaccattatacaacctaaa 126  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||||||| ||| ||||| ||||||||||| ||||||||||    
T  36537641 ggagaaaagaaagcttcttatgtcatttgaaactttaagcacctcaaattgcttaaaagattcaaaccattacacaacctaaa 36537723  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 23156963 - 23156873
Alignment:
Q  13 gatgaactagaaaaactccctatcttgtaggggagaaaagaaagcttcttgtgtcatttggagctttaagcacctcaaatttcttgaaaga 103  Q
    |||||||||||||||  || || ||| ||| |||||||||||||||||||||||| |||| | |||| || | |||||||| |||||||||    
T  23156963 gatgaactagaaaaaacccatagcttatagaggagaaaagaaagcttcttgtgtcctttgtaactttgagaaactcaaattccttgaaaga 23156873  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 18763816 - 18763860
Alignment:
Q  81 agcacctcaaatttcttgaaagaatcaaaccattatacaacctaa 125  Q
    |||||| |||||||||||| | ||||||||||||| |||||||||    
T  18763816 agcaccacaaatttcttgagaaaatcaaaccattacacaacctaa 18763860  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 17274849 - 17274706
Alignment:
Q  46 agaaaagaaagcttcttgtgtcatttggagctttaagcacctcaaatttcttgaaagaatcaaaccattatacaacctaaaattgtccctcta-----ag 140  Q
    |||||| |||| ||||||| || |||| | |||| ||||||||||||| ||||||||| ||||||||||| |||||||| ||||||| |||||     ||    
T  17274849 agaaaaaaaagtttcttgtatcctttgtaactttgagcacctcaaattccttgaaagattcaaaccattacacaacctacaattgtctctctagatctag 17274750  T
Q  141 -tccaaattctcacaaagaactataaaggaagtgttttcttatg 183  Q
     ||||||||||| ||||||||||| ||| |||| ||||||||||    
T  17274749 atccaaattctctcaaagaactatgaagaaagtcttttcttatg 17274706  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 8461994 - 8461879
Alignment:
Q  24 aaaactccctatcttgtaggggagaaaagaaagcttctt-gtgtcatttggagctttaagcacctcaaatttcttgaaagaatcaaaccattatacaacc 122  Q
    |||| |||||| | ||||| | || |||||||| ||||| ||||| |||||| |||| |||||||||||||  |||||||| | || |||||| ||||||    
T  8461994 aaaattccctagcatgtagagtaggaaagaaagtttctttgtgtcttttggaactttgagcacctcaaattcgttgaaagattaaacccattacacaacc 8461895  T
Q  123 taaaattgtccctcta 138  Q
    || |||||||||||||    
T  8461894 tataattgtccctcta 8461879  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 15848831 - 15848958
Alignment:
Q  13 gatgaactagaaaaactccctatcttgtaggggagaaaagaaa-gcttcttgtgtcatttggagctttaagcacctcaaatttcttgaaagaatcaaacc 111  Q
    |||||||||||||||  ||||| |||||||  |||||||||||  ||||||||| | ||  || |||||| ||| | ||||||||| |||||  ||||||    
T  15848831 gatgaactagaaaaatcccctagcttgtagaagagaaaagaaatccttcttgtgcctttctgaactttaaacacttaaaatttcttaaaagatccaaacc 15848930  T
Q  112 attatacaacctaaaattgtccctctaa 139  Q
    |||| |||||||| |||||| |||||||    
T  15848931 attacacaacctacaattgttcctctaa 15848958  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 23333614 - 23333496
Alignment:
Q  69 tttggagctttaagcacctcaaatttcttgaaagaatcaaaccattatacaacctaaaattgtccctctaag------tccaaattctcacaaagaacta 162  Q
    |||||| |||| | ||||||||||| |||||| ||  |||||||||| | |||||| |||| |||||||||       |||||||||||||||||||| |    
T  23333614 tttggaactttgaacacctcaaattccttgaaggatccaaaccattacaaaacctacaattttccctctaatcctagatccaaattctcacaaagaacaa 23333515  T
Q  163 taaaggaagtgttttctta 181  Q
    ||||| ||| |||||||||    
T  23333514 taaagaaagagttttctta 23333496  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 200119 - 200075
Alignment:
Q  81 agcacctcaaatttcttgaaagaatcaaaccattatacaacctaa 125  Q
    ||||||||||| || |||||||||||||||||||| |||||||||    
T  200119 agcacctcaaactttttgaaagaatcaaaccattacacaacctaa 200075  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 12708428 - 12708345
Alignment:
Q  50 aagaaagcttcttgtgtcatttggagctttaagcacctcaaatttcttgaaagaatcaaaccattatacaacctaaaattgtcc 133  Q
    ||||||||||||| ||||  |||||  ||| |||| |||||||| ||||||||| ||||||||||  |||||| | ||||||||    
T  12708428 aagaaagcttcttatgtcccttggaattttgagcatctcaaattccttgaaagattcaaaccattgcacaaccaacaattgtcc 12708345  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 28733617 - 28733742
Alignment:
Q  14 atgaactagaaaaactccctatcttgtaggggagaaaagaaagc-ttcttgtgtcatttggagctttaagcacctcaaatttcttgaaagaatcaaacca 112  Q
    |||||||||||||| |||||| ||||||  ||||||||||| || ||||||| || ||| || |||| ||||  ||||||||||||||||| ||||||||    
T  28733617 atgaactagaaaaa-tccctagcttgtaaaggagaaaagaatgccttcttgtttcctttagaactttgagcatttcaaatttcttgaaagattcaaacca 28733715  T
Q  113 ttatacaacctaaaattgtccctctaa 139  Q
    ||| | ||||||||||||||| |||||    
T  28733716 ttacataacctaaaattgtccatctaa 28733742  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 16242067 - 16242156
Alignment:
Q  44 ggagaaaagaaagcttcttgtgtcatttggagctttaagcacctcaaatttcttgaaagaatcaaaccattatacaacctaaaattgtcc 133  Q
    ||||||||||||||||||| |||| ||| || |||| || |||||||||| ||| ||||| ||||||||||  |||||| | ||||||||    
T  16242067 ggagaaaagaaagcttcttatgtcctttagaactttgagaacctcaaattccttaaaagattcaaaccattgaacaaccaacaattgtcc 16242156  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 31692333 - 31692226
Alignment:
Q  81 agcacctcaaatttcttgaaagaatcaaaccattatacaacctaaaattgtccctctaagtc-----caaattctcacaaagaactataaaggaagtgtt 175  Q
    ||||| |||||||||||||||| ||||||| |||| ||||| || |||||||||||||| ||     | |||||||| |||||||||| | | |||||||    
T  31692333 agcacgtcaaatttcttgaaaggatcaaactattacacaacatacaattgtccctctaattctagaaccaattctcataaagaactatgatgaaagtgtt 31692234  T
Q  176 ttcttatg 183  Q
     |||||||    
T  31692233 ctcttatg 31692226  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 31634081 - 31634156
Alignment:
Q  13 gatgaactagaaaaactccctatcttgtaggggagaaaagaaag-cttcttgtgtcatttggagctttaagcacct 87  Q
    |||||||||||||||  ||||| ||||||| ||||||||||||| ||||||||  | |||||| |||| |||||||    
T  31634081 gatgaactagaaaaatcccctagcttgtagaggagaaaagaaagccttcttgtaccctttggaactttgagcacct 31634156  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 21715969 - 21715872
Alignment:
Q  39 gtaggggagaaaagaaag-cttcttgtgtcatttggagctttaagcacctcaaatttcttgaaagaatcaaaccattatacaacctaaaattgtccct 135  Q
    |||| ||||||||||||| |||||| |||| ||||||   || ||||| || ||||| |||||||||||||| ||||| ||||| || ||||||||||    
T  21715969 gtagaggagaaaagaaagtcttcttatgtcctttggaatcttgagcacgtctaattttttgaaagaatcaaatcattacacaacttacaattgtccct 21715872  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 4876898 - 4876798
Alignment:
Q  14 atgaactagaaaaactccctatcttgtaggggagaaaagaaagcttcttgtgtcatttggagctttaagcacctcaaatttcttgaaagaatcaaaccat 113  Q
    |||||||||||||| ||| || ||||||  |||||||| || |||||||||||| ||||||  ||| || |||| |||||  | |||||| |||||||||    
T  4876898 atgaactagaaaaaatcc-tagcttgtataggagaaaataacgcttcttgtgtcttttggaaatttgagaaccttaaattcgtggaaagattcaaaccat 4876800  T
Q  114 ta 115  Q
    ||    
T  4876799 ta 4876798  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 21513243 - 21513276
Alignment:
Q  105 tcaaaccattatacaacctaaaattgtccctcta 138  Q
    |||||||||||||||||||| |||||||||||||    
T  21513243 tcaaaccattatacaacctataattgtccctcta 21513276  T

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