View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11762_high_12 (Length: 333)
Name: NF11762_high_12
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11762_high_12 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 54688747 - 54688415
Alignment:
| Q |
1 |
cacacccactcattcttaaatcgaatgaacatttagacaccttattaagatcttccaatgaaacctcctcatcatcattgattttccataaaattgatgg |
100 |
Q |
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| T |
54688747 |
cacacccactcattcttaaatgtaatgaacatttagacaccttattaagatcttccaatgaaacctcctcatcatcattgattttccataaaattgatgg |
54688648 |
T |
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| Q |
101 |
cttgcaaaacttgatcgagtgtgttgaaaaattggttcagcttccactaacacaagatgcacttctgcatgagcaccaagaaaatggggtaaataacctt |
200 |
Q |
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| T |
54688647 |
cttgcaaaacttgatcgagtgtgttgaaaaattggttcagcttccactaacacaagatgcacttctacatgagcatcaagaaaatggggtaaataacctt |
54688548 |
T |
|
| Q |
201 |
ttggattgttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaagggaacttcaatccctcataagaa |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688547 |
ttggatggttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaagggaacttcaatccctcataagaa |
54688448 |
T |
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| Q |
301 |
gaagcaaaagaagaggaagcggtgaagtcgaac |
333 |
Q |
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| T |
54688447 |
gaagcaaaagaagaggaagcggtgaagtcgaac |
54688415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 54700686 - 54700377
Alignment:
| Q |
1 |
cacacccactcattcttaaatcgaatgaacatttagacaccttattaagatcttccaatgaaacc------tcctcatcatcattgattttccataaaat |
94 |
Q |
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| T |
54700686 |
cacacccactcatgcttaaatgcaatgaacatttggacaccttgttaagggcttcaaatgaaaccacctcttcctcctcaacatcgctttgcaataaaat |
54700587 |
T |
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| Q |
95 |
tgatggcttgcaaaacttgatcgagtgtgttgaaaaattggttcagcttccactaacacaagatgcacttctgcatgagcaccaagaaaatggggtaaat |
194 |
Q |
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|| ||||||| | | ||||| |||||||||||||||||| ||||||||||||| || |||||||||||||| |||||||| ||||||||| |||||||| |
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| T |
54700586 |
tggaggcttgcgagatttgattgagtgtgttgaaaaattgattcagcttccactcactcaagatgcacttctccatgagcatcaagaaaattgggtaaat |
54700487 |
T |
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| Q |
195 |
aaccttttggattgttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaagggaacttcaatccctca |
294 |
Q |
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||||| |||||| | |||||||||||||||||||||||||| ||||| |||||||||||| | || ||||||||||| |||||||||||||||||| ||| |
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| T |
54700486 |
aacctcttggatggatccttaaggctattagatgtgtgtagcgcagccaaagatgctttactgcatacaaaagaatgtacaagggaacttcaatccatca |
54700387 |
T |
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| Q |
295 |
taagaagaag |
304 |
Q |
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|||||||||| |
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| T |
54700386 |
taagaagaag |
54700377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 54693324 - 54693016
Alignment:
| Q |
1 |
cacacccactcattcttaaatcgaatgaacatttagacaccttattaagatcttccaatgaaacctcctcatcatcattgattttccataaaattgatgg |
100 |
Q |
| |
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||||||||||||||||| ||| ||| ||||||| ||||||||| |||| |||||||||||||||||||| |||| || || |||||| |||| || |
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| T |
54693324 |
cacacccactcattcttcaatgcaatcaacatttggacaccttactaaggtcttccaatgaaacctcctcgtcat---tgcttcaccataagattggagg |
54693228 |
T |
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| Q |
101 |
cttgcaaaacttgatcgagtgtgttgaaaaattggttcagcttccactaacacaagatgca----cttctgcatgagcaccaagaaaatggggtaaataa |
196 |
Q |
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||||| | | ||| |||||||||||||||| || |||||||| |||| || | ||||||| ||| | |||||||| ||||| || |||||||| | |
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| T |
54693227 |
cttgcgagatttggtcgagtgtgttgaaaatttaattcagctttcactcactcgagatgcatgcccttgtccatgagcatcaagagaaatgggtaaatga |
54693128 |
T |
|
| Q |
197 |
ccttttggattgttccttaaggctattagatgtgtgtagtgcagctaa----agatgctttaattcacacaaaagaatgcacaagggaacttcaatccct |
292 |
Q |
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| T |
54693127 |
cttgtttgatggatccctaagactcttagatgtgtgcagtgcagctaattaaagatgctttacttcacacaaaagaatgcacaagggaacttcagtccat |
54693028 |
T |
|
| Q |
293 |
cataagaagaag |
304 |
Q |
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|||||||||||| |
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| T |
54693027 |
cataagaagaag |
54693016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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