View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11762_high_14 (Length: 309)
Name: NF11762_high_14
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11762_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 38300653 - 38300869
Alignment:
| Q |
1 |
ttaagctttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300653 |
ttaagctttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttga |
38300752 |
T |
|
| Q |
101 |
caagtattctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatctgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38300753 |
caagtattctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatctgac |
38300852 |
T |
|
| Q |
201 |
ggcctatttgatgtaag |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
38300853 |
ggcctatttgatgtaag |
38300869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 38309302 - 38309516
Alignment:
| Q |
3 |
aagctttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgaca |
102 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| |||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
38309302 |
aagctttccacattggcttattgttactcaaaacttaatgcatcaacctgcgaaaggaagttgcagcaagtaaagagcaagttgtacatgctatttcaca |
38309401 |
T |
|
| Q |
103 |
agtattctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatctgacgg |
202 |
Q |
| |
|
|| ||||| ||||||||||| ||||| |||||||||||| || ||||||||||||||||| ||||||| ||| |||||||||| ||||||||| | || |
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| T |
38309402 |
agaattcttgcaaaagtacttcttctggcgtgcaaagaacaattcaggaccaatcttctagtgtgccattgcaaaagaagttaaagtctttatctcaggg |
38309501 |
T |
|
| Q |
203 |
cctatttgatgtaag |
217 |
Q |
| |
|
||||||||||||||| |
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|
| T |
38309502 |
cctatttgatgtaag |
38309516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 38321404 - 38321614
Alignment:
| Q |
7 |
tttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagta |
106 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| || | ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
38321404 |
tttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgcaagaagtaaagagtaagttgtacatgctatttgacaagta |
38321503 |
T |
|
| Q |
107 |
ttctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatctgacggccta |
206 |
Q |
| |
|
|||||||||||||| | ||||| | |||||||||| ||| |||||| ||||||||||||||||||| ||| |||| || || |||| |||| |||||||| |
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|
| T |
38321504 |
ttctagcaaaagtatttcttctggggtgcaaagaactattcaggacgaatcttctagcatgccattgcaaaagaaattgaagtcttcatctcacggccta |
38321603 |
T |
|
| Q |
207 |
tttgatgtaag |
217 |
Q |
| |
|
||||||||||| |
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|
| T |
38321604 |
tttgatgtaag |
38321614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 38317317 - 38317519
Alignment:
| Q |
15 |
ttggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattctagca |
114 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| | || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
38317317 |
ttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgcaactagtaaagagaaagttgtacatgctatttgacaagtattctagca |
38317416 |
T |
|
| Q |
115 |
aaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatctgacggcctatttgatgt |
214 |
Q |
| |
|
|||| ||| ||||| || | |||||| || |||||||||||||||| ||||||||| ||| |||| ||||| ||||||||| |||||||||| |||| |
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|
| T |
38317417 |
aaagcacttcttctggcctaaaaagaactactcaggaccaatcttctaccatgccattgcaaaagaaattaaagtctttatctcacggcctattcaatgt |
38317516 |
T |
|
| Q |
215 |
aag |
217 |
Q |
| |
|
||| |
|
|
| T |
38317517 |
aag |
38317519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 38326154 - 38326349
Alignment:
| Q |
7 |
tttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagta |
106 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| |||||| |
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|
| T |
38326154 |
tttcaacattggcttattgttactcaaaacttgatgcatcaacctgtgaaaggaagttgcaacaagtaaggacgaagttgtacatgctatttggcaagta |
38326253 |
T |
|
| Q |
107 |
ttctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatctgacgg |
202 |
Q |
| |
|
||||||| || ||||| ||||| || ||||||||| | | |||| ||||||||| | |||| |||| ||| |||| | || ||||||||| |||| |
|
|
| T |
38326254 |
ttctagccaacgtacttcttctggcatgcaaagaactgttcagggccaatcttcgaccatgtcattgcaaaagaactccaagtctttatctcacgg |
38326349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 38306564 - 38306766
Alignment:
| Q |
15 |
ttggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattctagca |
114 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
38306564 |
ttggctgattgttactcaaaactcgatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgacaagtattctagca |
38306663 |
T |
|
| Q |
115 |
aaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatctgacggcctatttgatgt |
214 |
Q |
| |
|
|||||||| ||||| | |||||| || | | |||| ||||||||||| ||||||||| ||| |||| | | ||||||||| | |||||||||||||| |
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|
| T |
38306664 |
aaagtacttcttctggtatgcaaacaactgttcagggccaatcttctaccatgccattgcaaaagaactctgagtctttatctcatggcctatttgatgt |
38306763 |
T |
|
| Q |
215 |
aag |
217 |
Q |
| |
|
||| |
|
|
| T |
38306764 |
aag |
38306766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 38313898 - 38314072
Alignment:
| Q |
7 |
tttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagta |
106 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||| ||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
38313898 |
tttcaagattggctgcttgttactcaaaactagatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgccaagta |
38313997 |
T |
|
| Q |
107 |
ttctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcatgccatttcaagagaa |
181 |
Q |
| |
|
||||||||||||||| ||||| | ||||||| || ||| ||| ||||||||||| ||||||||| ||| |||| |
|
|
| T |
38313998 |
ctctagcaaaagtacttcttctagggtgcaaacaactatttagggccaatcttctaccatgccattgcaaaagaa |
38314072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 38850033 - 38849817
Alignment:
| Q |
10 |
caacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatgctatttgacaagtattc |
109 |
Q |
| |
|
|||| |||||| ||||||| |||||||| ||||||||||| ||||||||||| | || ||||||||||| ||||||| |||||||||||| ||| |||| |
|
|
| T |
38850033 |
caaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctacagcaagtaaagagaaagttgtgcatgctatttgagaagcattc |
38849934 |
T |
|
| Q |
110 |
tagcaaaagtactccttcttgcgtgcaaagaattat---------ccaggaccaatcttctagcatgccatttcaagagaagttaaactctttatctgac |
200 |
Q |
| |
|
| |||| || ||| || || | || ||||||| ||| |||||||||||||||||||||||||| ||| |||| ||||| ||||||||| | |
|
|
| T |
38849933 |
tggcaacagcactactgctggggttcaaagaactattaaggagaatcaggaccaatcttctagcatgccattacaaaagaaattaaagtctttatctcat |
38849834 |
T |
|
| Q |
201 |
ggcctatttgatgtaag |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38849833 |
ggcctatttgatgtaag |
38849817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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