View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11762_high_16 (Length: 297)
Name: NF11762_high_16
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11762_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 46134025 - 46133741
Alignment:
| Q |
13 |
atgaacacaagcaaagccgaagcagaacggttacttgaaatcggagaagaactcttgcagaaaagagatctcaaaggttcaagagaaattgcgaatctgg |
112 |
Q |
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| T |
46134025 |
atgaacacaagcaaagccgaagcagaacggttacttgaaatcggagaagaactcttgcagaaaagagatctcaaaggttcaagagaaattgcgaatctgg |
46133926 |
T |
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| Q |
113 |
ttcaagaaaccgaacctcttcttgaaggttccgatcagatcctcgcaattgttgatgttctcgaagcggcggagaagcctctcaatctcaacaaccacca |
212 |
Q |
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| T |
46133925 |
ttcaagaaaccgaacctcttcttgaaggttccgatcagatcctcgcaattgttgatgttctcgaagcggcggagaagcctctcaatctcaacaaccacca |
46133826 |
T |
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| Q |
213 |
cctcgattggtacgccgttcttcaaattgatcgcaattcacaagatctcaatcgcattaagaaacagtatcgtactctcgctctt |
297 |
Q |
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| T |
46133825 |
cctcgattggtacgccgttcttcaaattgatcgcaattcacaagatctcaatcgcattaagaaacagtatcgtactctcgctctt |
46133741 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 27863035 - 27862997
Alignment:
| Q |
115 |
caagaaaccgaacctcttcttgaaggttccgatcagatc |
153 |
Q |
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| T |
27863035 |
caagaaaccgaaccccttcttgaaggttccgatcagatc |
27862997 |
T |
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