View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11762_high_4 (Length: 399)
Name: NF11762_high_4
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11762_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 114 - 381
Target Start/End: Original strand, 48172252 - 48172519
Alignment:
| Q |
114 |
ttaagggcaaatcattcgggaatcacaagttagaatcctggttgaatcaataattaaccagagttccgactgaactctagattaccaagggcccttaccg |
213 |
Q |
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| T |
48172252 |
ttaagggcaaatcattcgggaatcacaagttagaatcctggttgaatcaataattaaccagagttccgactgaactctagattaccaaaggcccttaccg |
48172351 |
T |
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| Q |
214 |
ttggaatcggagagttaaaacacnnnnnnnccccataatcatctcatattgtattttattttatataggacaaaaagtaatattgaaaagagattgctat |
313 |
Q |
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| T |
48172352 |
ttggaatcggagagttaaaacacaaaaaaactccataatcatctcatattgtattttattttatataggacaaaaagtaatgttgaaaagagattgctat |
48172451 |
T |
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| Q |
314 |
agtttgtgtacccatgaaactagattttgctcgtcgtgcgatcttgtggtgtcaacggctcgtcttcc |
381 |
Q |
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| T |
48172452 |
agtttgtgtacccatgaaactagattttgctcgtcgtgcgatcttgtggtgtcaacggctcgtcttcc |
48172519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 48172171 - 48172245
Alignment:
| Q |
5 |
gagaagcagagatattgcttaaaatattagtttatatcatactggagaaattgcacttaggaaagctcccaaaat |
79 |
Q |
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| T |
48172171 |
gagaatcaaagatattgcttaaaatattagtttatatcatactggagaaattgcacttaggaaagctcccaaaat |
48172245 |
T |
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