View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11762_low_13 (Length: 332)
Name: NF11762_low_13
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11762_low_13 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 38300677 - 38300364
Alignment:
| Q |
1 |
caattagccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38300677 |
caattagccaatgttgaaagcttaatccttgggtcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
38300578 |
T |
|
| Q |
101 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38300577 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaaggcattggactttccaaacttgcaaaaaatacaagttggaagt |
38300478 |
T |
|
| Q |
201 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38300477 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacat |
38300378 |
T |
|
| Q |
301 |
aacacataactatc |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38300377 |
aacacataactatc |
38300364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 38321422 - 38321109
Alignment:
| Q |
1 |
caattagccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
100 |
Q |
| |
|
|||| ||||||||| |||| ||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |
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|
| T |
38321422 |
caatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatca |
38321323 |
T |
|
| Q |
101 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||| |
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|
| T |
38321322 |
tcctttcagccattctctttatagcttcatcttcatctctcaaactatcagctaaaacacattgaactttccaaacttgcaaaaaatacatgtttgaagt |
38321223 |
T |
|
| Q |
201 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacat |
300 |
Q |
| |
|
|||||||| |||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
38321222 |
aggatgtgctgtgccattaatcatgttagcagtttcccttaaaggcaacaagaacacacaaatcttttcaactcttttccattcttctaccgaaggacat |
38321123 |
T |
|
| Q |
301 |
aacacataactatc |
314 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
38321122 |
aactcataattatc |
38321109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 38309324 - 38309025
Alignment:
| Q |
1 |
caattagccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
100 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
38309324 |
caataagccaatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaacttggtcaaca |
38309225 |
T |
|
| Q |
101 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38309224 |
tcctttcaaccattctctttatatcttcatcttcatctcccaaattatcaactagaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
38309125 |
T |
|
| Q |
201 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacat |
300 |
Q |
| |
|
| ||||||||| |||| ||| ||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||| |
|
|
| T |
38309124 |
acgatgtgttgcaccatttatcgtgttggcagtttcgctaaaaggcaacaagaatgcacaaatcttttctactcttttccactcttctgccgcaggacat |
38309025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 38326172 - 38325859
Alignment:
| Q |
1 |
caattagccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
100 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||| |||||||||||||||| ||||||||||||||| ||||||| |||| |||| ||||||||| ||| || |
|
|
| T |
38326172 |
caataagccaatgttgaaaatttaatccgtgggtcaagaaccgctcccaatgcaagaacaacactgtactcattccaaaatttgtcaaacttgctcatca |
38326073 |
T |
|
| Q |
101 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| | |||||| |||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
38326072 |
tcctttcagccattctctttataacttcatcttcatctcccaaagtagcaactagaacacattggactttccaaacttgcaaaaattacaaattggaagt |
38325973 |
T |
|
| Q |
201 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacat |
300 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||||||||| ||||||||||||||| |||| ||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
38325972 |
aggatgcgttgtgtcattaatcatgttagcagtttcacaaaaaggcaacaagaatgcacagatcttttctactcttttctactcttctaccgaaggacat |
38325873 |
T |
|
| Q |
301 |
aacacataactatc |
314 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
38325872 |
aactcataattatc |
38325859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 38317327 - 38317044
Alignment:
| Q |
1 |
caattagccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
100 |
Q |
| |
|
|||| |||||| || |||| ||| |||| ||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||| || |
|
|
| T |
38317327 |
caataagccaacgtcgaaaacttcatccgtgggtcaagaactgctcccagtgcaagaacaacactatactcatcccaatatttgtcaaactcgctcatca |
38317228 |
T |
|
| Q |
101 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
38317227 |
tcctttcagccattctctttataactttatcttcatctcccaaactatcaactagaacacattggactttccaaacttgcaaaaaacacaagtttgaagt |
38317128 |
T |
|
| Q |
201 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactc |
284 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||||||||| |
|
|
| T |
38317127 |
aggatgcgttgtgtcattaatcatgttggcagtttcataaaaaggcagcaagaacgcacaaatcttttcaactcttttccactc |
38317044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 6 - 300
Target Start/End: Complemental strand, 38313911 - 38313619
Alignment:
| Q |
6 |
agccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctt |
105 |
Q |
| |
|
||||||| |||||| || |||| ||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| || ||| ||| |
|
|
| T |
38313911 |
agccaatcttgaaaatttcatccgtgggtcaagaactgctcccattgcaagaacaacacta--ctcatcccaatatttcttaaacttgcccatcatactt |
38313814 |
T |
|
| Q |
106 |
tcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggat |
205 |
Q |
| |
|
| |||||||||| || | |||||||| ||||||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38313813 |
ttagccattctcgctacaaattcatcttcatctcccaaactatcaactaaaacacattgaagtttccaaacttgcgaaaaatacaagttggaagtaggat |
38313714 |
T |
|
| Q |
206 |
gtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacat |
300 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |||||| |||||||| |||||||||||| |||||||||||| |||||| ||| ||||||| |
|
|
| T |
38313713 |
gtgttgcgccattaatcatgttggcagtttcacaaaaaggtaacaagaatgcacaaatcttttctactcttttccagtcttctgccgcaggacat |
38313619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 47 - 278
Target Start/End: Complemental strand, 38306540 - 38306309
Alignment:
| Q |
47 |
ccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttcagccattctctttatatcttcatcttgatctcccaaaca |
146 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||| || |||||||| |||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
38306540 |
ccattgcaagaacaacactatgctcatcccaatatttcttaaacttgcccatcatccttttagccattctcgctataacttcatcttcatctcccaaact |
38306441 |
T |
|
| Q |
147 |
atcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcatgttggcagtttcactaaaaggc |
246 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
38306440 |
atcaacaagaacacattggactttccaaacttgcaaaaaatacaagttggaagtgggatgtgttgcaccattgatcatgttggcagtttcacgaaaaggc |
38306341 |
T |
|
| Q |
247 |
aacaagaacacacaaatcttttgtactctttt |
278 |
Q |
| |
|
|||| ||| |||||||||||| |||||||| |
|
|
| T |
38306340 |
aacatgaatgcacaaatcttttccactctttt |
38306309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 38850018 - 38850331
Alignment:
| Q |
1 |
caattagccaatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagca |
100 |
Q |
| |
|
|||| |||||| |||| || ||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
38850018 |
caataagccaaggttgtaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatca |
38850117 |
T |
|
| Q |
101 |
tcctttcagccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagt |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38850118 |
tcctttcagccattttctttatatcttcatcttcatctcccaaactatcaactagaacacattggactttccaaacttgtaaaaaatacaagttggaagt |
38850217 |
T |
|
| Q |
201 |
aggatgtgttgtggcattaatcatgttggcagtttcactaaaaggcaacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacat |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
38850218 |
aggatgtgttgtgctattaatcatgttggcagtttcacaaaaaggcaacaggaatgcacaaatcttttctactcttttccactcttccgccgaaggacat |
38850317 |
T |
|
| Q |
301 |
aacacataactatc |
314 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
38850318 |
aaatcataactatc |
38850331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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