View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11762_low_15 (Length: 306)
Name: NF11762_low_15
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11762_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 22905421 - 22905707
Alignment:
| Q |
13 |
agatgaacacaagccgaaatgccattgaaaacaatacttcatttttatatcctctctgttgagaatagttatata--ggtctaacttccaaattaaagtt |
110 |
Q |
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| T |
22905421 |
agatgaacacaagccgaaatgccattgaaaacaatacttcatttttatatcctctctgttgagaatagttatatataggcctaacttccaaattgaagtt |
22905520 |
T |
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| Q |
111 |
tttatattttctttgtgagagttaacttggaatagttat--------gagcttatttttatatcctctcttgttgagagtaatcatttgagaaaacatta |
202 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22905521 |
tttatattttctttgtgagagttaacatggaatagttatgaacttatgagcttatttttatatcctctcttgttgagagtaatcatttgagaaaacattg |
22905620 |
T |
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| Q |
203 |
tattcaaacacaaacttgatcttgcattaaa-tttgttttacaaatgtattttctcttattgcaccttgattatcatagctcacttg |
288 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22905621 |
tattcaaacacaaacttgatcttgcattaaattttgttttacaaatgtattttctcttattgcaccttgattatcatagctcacttg |
22905707 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 17182885 - 17182924
Alignment:
| Q |
159 |
tttatatcctctcttgttgagagtaatcatttgagaaaac |
198 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||| |
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| T |
17182885 |
tttatatcctttcttgttgagagttatcatttgagaaaac |
17182924 |
T |
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