View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11762_low_17 (Length: 292)
Name: NF11762_low_17
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11762_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 46133715 - 46133440
Alignment:
| Q |
1 |
tttcttatgccgaactcgctttcaaactcgttaaggatgcatgggctgttttgtctgatccggttcaaaaagcacagtatgataagggttttgaatttga |
100 |
Q |
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| T |
46133715 |
tttcttatgccgaactcgctttcaaactcgttaaggatgcttgggctgttttgtctgatccggttcaaaaagcacagtatgataagggttttgaatttga |
46133616 |
T |
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| Q |
101 |
gcaattgggaaatggaaatggaaatgtgaatttttggactgcatgtccttattgttatcatatgtatgaatatcctagggtttatgagggttgttgtttg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46133615 |
gctattgggaaatggaaatggaaatgtgaatttttggactgcatgtccttattgttatcatatgtatgaatatcctagggtttatgagggttgttgtttg |
46133516 |
T |
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| Q |
201 |
atgtgtcagaaatgtgataagtcatttcatggtgtttcgattccttctcttccgcctattgttccgggacaagaag |
276 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46133515 |
atgtgtcagaaatgtgataagtcgtttcatggtgtttcgattccttctcttccgcctattgttccgggacaagaag |
46133440 |
T |
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