View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11762_low_18 (Length: 280)
Name: NF11762_low_18
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11762_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 39241611 - 39241852
Alignment:
| Q |
17 |
gagataaaagctgtggcaggaagtaccatcggtggagaggacttgcttcagaatatgatgtgtcatctcttaccagattctgaaaacatattcaagaatc |
116 |
Q |
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| T |
39241611 |
gagataaaagctgtggcaggaagtaccatcggtggagaggacttgcttcagaatatgatgtgtcatctcttaccagattctgaaaacatattcaagaatc |
39241710 |
T |
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| Q |
117 |
acggggttaaagaaattaaatcgatggcattacttcgagttgcaaaccatgatgcaattcatcagctttcctctcaaatcaatgttcaggttgatgtgga |
216 |
Q |
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| T |
39241711 |
acggggttaaagaaattaaatcgatggcattacttcgagttgcaacccatgatgcaattcatcggctttcctctcaaatcaattttcaggttgatgtgga |
39241810 |
T |
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| Q |
217 |
cttgggagatggtttgaagatatgcaaggttgttgatagggc |
258 |
Q |
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| T |
39241811 |
cttgggagatggtttgaagatatgcaaggttgttgatagggc |
39241852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 807964 - 808204
Alignment:
| Q |
18 |
agataaaagctgtggcaggaagtaccatcggtggagaggacttgcttcagaatatgatgtgtcatctcttaccagattctgaaaacatattcaagaatca |
117 |
Q |
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| T |
807964 |
agataaaagccttggcaggaagtaccatcggtggagaagatttgcttcagaatatgatgcgccatctcttaccagattctgaaaatatattcaagcgtca |
808063 |
T |
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| Q |
118 |
cggggttaaagaaattaaatcgatggcattacttcgagttgcaaaccatgatgcaattcatcagctttcctctcaaatcaatgttcaggttgatgtggac |
217 |
Q |
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| T |
808064 |
cggggttgaagaaattaagtcaatggcattgcttcgagttgcaacccaggatgcaattcatcagctttccacccaaagcagtgttcaggttgatgtagat |
808163 |
T |
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| Q |
218 |
ttgggagatggtttgaagatatgcaaggttgttgatagggc |
258 |
Q |
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| T |
808164 |
ttgggaaatagtttgaagatatgcaaggttgttgacagggc |
808204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 47842826 - 47842917
Alignment:
| Q |
23 |
aaagctgtggcaggaagtaccatcggtggagaggacttgcttcagaatatgatgtgtcatctcttaccagattctgaaaacatattcaagaa |
114 |
Q |
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| T |
47842826 |
aaagctttggcaggaagttctagtggtggagaagacttgcttgtgaatatgatacgttatctcttaccagattctgaaaatatattcaagaa |
47842917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 42927097 - 42927003
Alignment:
| Q |
20 |
ataaaagctgtggcaggaagtaccatcggtggagaggacttgcttcagaatatgatgtgtcatctcttaccagattctgaaaacatattcaagaa |
114 |
Q |
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| T |
42927097 |
ataaaagccctgacaggaagtcctattggtagagaagatttgcttgaaaatatgatttgtcatctcttacctgattctaaaaatatattcaagaa |
42927003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 44728094 - 44728001
Alignment:
| Q |
20 |
ataaaagctgtggcaggaagtaccatcggtggagaggacttgcttcagaatatgatgtgtcatctcttaccagattctgaaaacatattcaaga |
113 |
Q |
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|||||||| ||||||||||| | || |||||||| || |||||| |||||||||||||||||||| || |||| ||||| |||||||||| |
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| T |
44728094 |
ataaaagcgttggcaggaagtgctattggtggagaagatttgcttggaaatatgatgtgtcatctctttcccgattacgaaaatatattcaaga |
44728001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 47879595 - 47879519
Alignment:
| Q |
173 |
attcatcagctttcctctcaaatcaatgttcaggttgatgtggacttgggagatggtttgaagatatgcaaggttgt |
249 |
Q |
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||||||| ||||||||||| | | |||| || ||||| | ||||||||||||||||| |||||| |||||||||| |
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| T |
47879595 |
attcatcgactttcctctcagacaagtgttgagtttgatttagacttgggagatggtttaaagataggcaaggttgt |
47879519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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