View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11762_low_2 (Length: 529)
Name: NF11762_low_2
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11762_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 324 - 466
Target Start/End: Original strand, 13869898 - 13870037
Alignment:
| Q |
324 |
taatatgtaaccaaccaagcaccttaattagaccataccttgaaggcaaactgacaatgaaggaaaatatgtgaggagatttcagccctcagattgcaga |
423 |
Q |
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| T |
13869898 |
taatatgtaaccaaccaagcacctta----gaccataccttgaaggcaaactgacaatgaaggaaaatatgtgaggagatttcagccctcagattgcaga |
13869993 |
T |
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| Q |
424 |
aaacacaattcactgagtcatctaaaggc-aaactctcctcctt |
466 |
Q |
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| T |
13869994 |
aaacacaattcactgagtcatctaaaggcaaaactctcctcctt |
13870037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 129 - 317
Target Start/End: Original strand, 13872055 - 13872242
Alignment:
| Q |
129 |
atgccagagaaagagaattacaaggaacttaacaagtgaggggataacttgataat-ccataaaacagttaaaaatgaaatgatgttatcaatgctatga |
227 |
Q |
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| T |
13872055 |
atgccggagaaagacaattacaaagaacttaacaagtgaggtgatcacttgatagttccataaaacagttaaaaatgaaattatgctatcaatactatga |
13872154 |
T |
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| Q |
228 |
tttgataagccgacaacttacgacaacagaatgacaattaccaagaacttcaacaagtgtagtgatcacttcccataacaacacaattaa |
317 |
Q |
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| T |
13872155 |
tttgacaatccgacaagttacggcaacagaatgacaattaccaagaacttcaacaagtgtagtgatcacttcctata--aacacaattaa |
13872242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 184 - 317
Target Start/End: Original strand, 13884405 - 13884534
Alignment:
| Q |
184 |
tccataaaacagttaaaaatgaaatgatgttatcaatgctatgatttgataagccgacaacttacgacaacagaatgacaattaccaagaacttcaacaa |
283 |
Q |
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| T |
13884405 |
tccataaaacagttaaag--gaaattatgctatcaaaactaagatttgacaaactaacaacttacggcaccagaatgacaattaccaagaacttcaacaa |
13884502 |
T |
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| Q |
284 |
gtgtagtgatcacttcccataacaacacaattaa |
317 |
Q |
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| T |
13884503 |
gtgtagtgatcacttcccata--aacacaattaa |
13884534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 13868414 - 13868472
Alignment:
| Q |
20 |
atgcatactactgcttgtgacagaattccttaaagcataactaaacctatcaaacctgg |
78 |
Q |
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| T |
13868414 |
atgcatactactgcttgtgacagaattccttaaagcataactaaacctatcaaacctgg |
13868472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 13874401 - 13874495
Alignment:
| Q |
145 |
attacaaggaacttaacaagtgaggggataacttgataatcca-taaaacagttaaaaatgaaatgatgttatcaatgctatgatttgataagcc |
238 |
Q |
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| T |
13874401 |
attacaaagaacttaacaagtgaggggatcacttgatagtcccgtaaaaccattgaaaattaaatgatgttatcaatgctatgatttgacaagcc |
13874495 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 12957723 - 12957664
Alignment:
| Q |
256 |
gaatgacaattaccaagaacttcaacaagtgtagtgatcacttcccataacaacacaattaa |
317 |
Q |
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| T |
12957723 |
gaatgacaattaccaagaacttcaaaaagtgtagtaatcacttcccata--aacacaattaa |
12957664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 463 - 512
Target Start/End: Original strand, 13870096 - 13870145
Alignment:
| Q |
463 |
cctttgtaggagccaggcttttccaaacggacccaaacaccctttctttg |
512 |
Q |
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| T |
13870096 |
cctttgtagaagccaggcttttccacacggacccaaacaccctttctttg |
13870145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 13882533 - 13882613
Alignment:
| Q |
135 |
gagaaagagaattacaaggaacttaacaagtgaggggataacttgataat-ccataaaacagttaaaaatgaaatgatgtt |
214 |
Q |
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| T |
13882533 |
gagaaagacaattacaaagaacttaacaagtgagaggatcacagtatagtcccataaaacagttaaaaatgaaatgatgtt |
13882613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 298
Target Start/End: Complemental strand, 14392653 - 14392504
Alignment:
| Q |
148 |
acaaggaacttaacaagtgaggggataacttgataat-ccataaaacagttaaaaatgaaatgatgttatcaatgctatgatttgataagccgacaactt |
246 |
Q |
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| T |
14392653 |
acaatgaactttacaagtgaggggatcacttgatagtcccataaaactgct-aaaatgaactgatgttgtcaatgcttttatttgagaagtcaacagctt |
14392555 |
T |
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| Q |
247 |
acgacaacagaatgacaattaccaagaacttcaacaagtgtagtgatcactt |
298 |
Q |
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| T |
14392554 |
attgcaataaaatgacgattacaaagaacttc-acaaatgtggtgatcactt |
14392504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 246
Target Start/End: Original strand, 16025058 - 16025180
Alignment:
| Q |
125 |
agtgatgccagagaaagagaattacaaggaacttaacaagtgaggggataacttgataatcc-ataaaacagttaaaaatgaaatgatgttatcaatgct |
223 |
Q |
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| T |
16025058 |
agtgatgccggagaaagacaattataaagaacttcacaagtaaatcgatcatttgatagtcccataaaacagttaaaaatgaaatggtgctatcaaggtt |
16025157 |
T |
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| Q |
224 |
atgatttgataagccgacaactt |
246 |
Q |
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||||||| ||||| ||||||| |
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| T |
16025158 |
ctgatttgccaagccaacaactt |
16025180 |
T |
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