View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11762_low_3 (Length: 514)

Name: NF11762_low_3
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11762_low_3
NF11762_low_3
[»] chr3 (24 HSPs)
chr3 (1-279)||(54270869-54271148)
chr3 (1-279)||(34128762-34129040)
chr3 (1-279)||(17358062-17358339)
chr3 (17-261)||(30338363-30338607)
chr3 (67-497)||(30341325-30341771)
chr3 (1-279)||(3476537-3476816)
chr3 (1-279)||(3482001-3482283)
chr3 (1-149)||(10321667-10321815)
chr3 (1-153)||(4117310-4117462)
chr3 (373-490)||(17358468-17358585)
chr3 (374-490)||(34128539-34128655)
chr3 (373-490)||(30338228-30338345)
chr3 (381-490)||(3476320-3476429)
chr3 (381-490)||(4117078-4117187)
chr3 (2-118)||(15762717-15762833)
chr3 (2-118)||(15767878-15767994)
chr3 (2-118)||(20090349-20090465)
chr3 (2-118)||(20095474-20095590)
chr3 (381-490)||(3481777-3481886)
chr3 (373-490)||(54271221-54271331)
chr3 (4-118)||(17368957-17369074)
chr3 (4-118)||(55129028-55129145)
chr3 (48-97)||(10321816-10321865)
chr3 (435-470)||(17358415-17358450)
[»] chr1 (14 HSPs)
chr1 (1-279)||(3584825-3585104)
chr1 (3-279)||(5730331-5730608)
chr1 (1-163)||(48246392-48246554)
chr1 (372-490)||(3585202-3585320)
chr1 (381-490)||(48246100-48246209)
chr1 (402-490)||(5730702-5730790)
chr1 (2-118)||(34317972-34318088)
chr1 (2-118)||(36684402-36684518)
chr1 (4-118)||(27711561-27711678)
chr1 (8-118)||(37404158-37404269)
chr1 (8-118)||(37409277-37409390)
chr1 (4-118)||(27716681-27716798)
chr1 (4-118)||(11250863-11250980)
chr1 (185-279)||(48246300-48246391)
[»] chr4 (30 HSPs)
chr4 (1-279)||(53797853-53798131)
chr4 (1-279)||(41393469-41393747)
chr4 (1-279)||(9763609-9763888)
chr4 (1-279)||(13710893-13711172)
chr4 (2-278)||(13695387-13695664)
chr4 (1-257)||(51019002-51019244)
chr4 (1-279)||(47045910-47046177)
chr4 (309-490)||(53798161-53798348)
chr4 (381-490)||(9763401-9763510)
chr4 (381-490)||(13711280-13711389)
chr4 (375-490)||(41393764-41393877)
chr4 (381-497)||(47045741-47045856)
chr4 (381-490)||(51018834-51018942)
chr4 (2-118)||(39999361-39999477)
chr4 (2-118)||(40004319-40004435)
chr4 (2-118)||(54343495-54343611)
chr4 (2-118)||(54348649-54348765)
chr4 (2-128)||(36354434-36354560)
chr4 (2-118)||(36359620-36359736)
chr4 (389-490)||(4206960-4207061)
chr4 (4-118)||(8985145-8985262)
chr4 (4-118)||(13700748-13700865)
chr4 (4-118)||(21304693-21304810)
chr4 (4-118)||(8980025-8980142)
chr4 (4-118)||(21299573-21299690)
chr4 (4-118)||(54991714-54991831)
chr4 (435-490)||(13695721-13695776)
chr4 (4-118)||(54990550-54990667)
chr4 (131-183)||(4205920-4205972)
chr4 (389-433)||(4206071-4206115)
[»] chr6 (21 HSPs)
chr6 (1-279)||(2817739-2818018)
chr6 (2-276)||(31981788-31982063)
chr6 (1-278)||(34142313-34142591)
chr6 (1-278)||(34154929-34155207)
chr6 (1-170)||(34376153-34376322)
chr6 (309-490)||(2817529-2817710)
chr6 (1-164)||(24191080-24191243)
chr6 (1-153)||(24192188-24192340)
chr6 (381-490)||(34142691-34142800)
chr6 (381-490)||(34155307-34155416)
chr6 (2-118)||(22697930-22698046)
chr6 (381-490)||(6727905-6728014)
chr6 (381-490)||(24190783-24190892)
chr6 (381-490)||(34376374-34376483)
chr6 (381-472)||(31982089-31982180)
chr6 (64-152)||(6728159-6728247)
chr6 (4-118)||(22703106-22703223)
chr6 (221-278)||(24191008-24191066)
chr6 (221-278)||(24192117-24192175)
chr6 (4-118)||(21401979-21402096)
chr6 (3-89)||(29491005-29491094)
[»] scaffold0594 (2 HSPs)
scaffold0594 (1-262)||(8818-9079)
scaffold0594 (401-490)||(8662-8751)
[»] chr2 (14 HSPs)
chr2 (1-279)||(4163182-4163448)
chr2 (1-279)||(28751343-28751600)
chr2 (2-118)||(42728307-42728423)
chr2 (2-118)||(42723138-42723254)
chr2 (2-118)||(44096594-44096710)
chr2 (419-490)||(4163023-4163094)
chr2 (435-490)||(28751149-28751204)
chr2 (4-118)||(40392557-40392674)
chr2 (4-117)||(40518213-40518329)
chr2 (2-118)||(44754293-44754399)
chr2 (2-118)||(44759459-44759565)
chr2 (55-117)||(40519925-40519987)
chr2 (378-416)||(28751208-28751246)
chr2 (309-338)||(4163124-4163153)
[»] scaffold0060 (2 HSPs)
scaffold0060 (1-279)||(37234-37513)
scaffold0060 (388-490)||(37572-37673)
[»] chr7 (29 HSPs)
chr7 (2-278)||(42572170-42572447)
chr7 (1-279)||(21080643-21080910)
chr7 (1-279)||(16539005-16539283)
chr7 (1-279)||(16626379-16626657)
chr7 (1-278)||(12934621-12934899)
chr7 (2-279)||(19309203-19309481)
chr7 (1-214)||(17495627-17495840)
chr7 (1-214)||(17557374-17557587)
chr7 (1-206)||(43893093-43893298)
chr7 (1-163)||(2234332-2234501)
chr7 (19-170)||(47176852-47177003)
chr7 (352-490)||(32212093-32212231)
chr7 (320-490)||(2234080-2234251)
chr7 (373-490)||(21080449-21080566)
chr7 (367-490)||(16538801-16538924)
chr7 (367-490)||(16626738-16626861)
chr7 (381-490)||(17496010-17496119)
chr7 (381-490)||(17557095-17557204)
chr7 (1-106)||(32212419-32212524)
chr7 (381-490)||(43893452-43893561)
chr7 (309-490)||(12934927-12935103)
chr7 (381-497)||(19308997-19309113)
chr7 (2-118)||(33238294-33238410)
chr7 (2-118)||(47994092-47994208)
chr7 (2-118)||(47999267-47999383)
chr7 (2-118)||(33243471-33243587)
chr7 (173-275)||(32212318-32212421)
chr7 (401-490)||(47176624-47176712)
chr7 (414-490)||(42572543-42572619)
[»] scaffold0166 (4 HSPs)
scaffold0166 (1-279)||(13331-13610)
scaffold0166 (2-229)||(18835-19062)
scaffold0166 (381-490)||(13114-13223)
scaffold0166 (381-490)||(18571-18680)
[»] chr5 (21 HSPs)
chr5 (1-214)||(1413710-1413923)
chr5 (1-279)||(26709327-26709584)
chr5 (1-279)||(26979061-26979318)
chr5 (1-279)||(36254060-36254332)
chr5 (2-229)||(24776452-24776679)
chr5 (2-229)||(24770997-24771224)
chr5 (309-490)||(1413201-1413387)
chr5 (381-490)||(24770733-24770842)
chr5 (381-490)||(24776187-24776296)
chr5 (381-490)||(36254427-36254536)
chr5 (146-214)||(1413444-1413512)
chr5 (4-118)||(17505191-17505308)
chr5 (4-118)||(17510296-17510413)
chr5 (4-118)||(41858831-41858941)
chr5 (4-118)||(42019811-42019928)
chr5 (4-118)||(42024591-42024708)
chr5 (134-183)||(1413508-1413557)
chr5 (4-118)||(43579898-43580015)
chr5 (309-411)||(1413554-1413653)
chr5 (439-490)||(26709656-26709707)
chr5 (439-490)||(26979390-26979441)
[»] chr8 (28 HSPs)
chr8 (1-182)||(24884937-24885118)
chr8 (1-205)||(21642934-21643137)
chr8 (1-205)||(21642559-21642762)
chr8 (1-205)||(21643309-21643512)
chr8 (1-205)||(21641434-21641637)
chr8 (1-205)||(21641809-21642012)
chr8 (1-205)||(21642184-21642387)
chr8 (3-205)||(21643749-21643950)
chr8 (90-263)||(17955442-17955615)
chr8 (1-147)||(43998955-43999101)
chr8 (381-497)||(42513969-42514085)
chr8 (375-490)||(43998674-43998788)
chr8 (386-490)||(17955262-17955366)
chr8 (383-490)||(21641254-21641361)
chr8 (2-118)||(32010818-32010934)
chr8 (2-118)||(32015992-32016108)
chr8 (381-490)||(24885236-24885343)
chr8 (47-112)||(42514180-42514245)
chr8 (309-361)||(17955367-17955419)
chr8 (1-47)||(17955614-17955660)
chr8 (233-279)||(43998883-43998929)
chr8 (383-432)||(21641687-21641736)
chr8 (383-432)||(21642062-21642111)
chr8 (383-432)||(21642437-21642486)
chr8 (383-432)||(21642812-21642861)
chr8 (383-432)||(21643187-21643236)
chr8 (46-118)||(2165553-2165625)
chr8 (228-279)||(42514127-42514179)
[»] scaffold0055 (1 HSPs)
scaffold0055 (2-118)||(3316-3432)
[»] scaffold0052 (1 HSPs)
scaffold0052 (2-118)||(81103-81219)
[»] scaffold0014 (2 HSPs)
scaffold0014 (2-118)||(26665-26781)
scaffold0014 (2-118)||(31837-31953)
[»] scaffold0517 (1 HSPs)
scaffold0517 (8-118)||(3805-3918)
[»] scaffold0011 (1 HSPs)
scaffold0011 (406-446)||(2237-2277)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 54270869 - 54271148
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||    
T  54270869 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattc 54270968  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  54270969 ccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacgcgccaaacttagcccacgacccagtaacggtaacccac 54271068  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggagc 279  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54271069 gacgcggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtcctccgcgtgcgggaatctcggagc 54271148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 34129040 - 34128762
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  34129040 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatc 34128941  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||| || |||||||| ||||    
T  34128940 ccgacctctctatttatagaggggatttcacctcgttttctccgccgacccggttcgcgacccgccaacgttagcccacgacccagcaacggtaacccac 34128841  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 279  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  34128840 gacgtggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgtgtgcgggaatctcggagc 34128762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 17358062 - 17358339
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  17358062 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatc 17358161  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||  ||||||||||||| || |||||||| ||||    
T  17358162 ccgagctctctatttatagaggggatttcacctcgttttctctgccga-ccggttcgcgacccgccaacgttagcccacgacccagcaacggtaacccac 17358260  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 279  Q
    ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  17358261 gactcggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgtgtgcgggaatctcggagc 17358339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 30338607 - 30338363
Alignment:
Q  17 tcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcccgagctctctattta 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30338607 tcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaaatcccgagctctctattta 30338508  T
Q  117 tagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccacgacgcggaaacgtgga 216  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  30338507 tagaggggatttgacctcgttttctccgccgacccggtttgcgacccgccaaacatagcccacgacccagtaacggtaacccacgacgcggaaacgtgga 30338408  T
Q  217 actgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgc 261  Q
     |||||||||||||| |||||||||||||||||||||||||||||    
T  30338407 gctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgc 30338363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 67 - 497
Target Start/End: Complemental strand, 30341771 - 30341325
Alignment:
Q  67 tcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgcc 166  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  30341771 tcgattctcggttttggagtgaagaatcccaatcccgagctctctatttatagaggggatttgacctcgttttctccgccgaccctgttcgcgacccgcc 30341672  T
Q  167 aaacttagcccacgacctagtaacggtaatccacgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgtgcg 266  Q
    ||||||||||||||||| | ||| ||||| |||| |||     ||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30341671 aaacttagcccacgacccattaagggtaacccaccacg-----acgcggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgcgtgcg 30341577  T
Q  267 ggaatctcggagcnnnnnnnnnnnnnttannnnnnnnnnnnnctgagcaccaaaaaatatatttctttat-----------agcccaagcccggcccggt 355  Q
    |||||||||||||             |||             ||||||||||||||||||||||||||||           ||||||||| |||||||||    
T  30341576 ggaatctcggagcaaaaaataaaaaattattttttcatttttctgagcaccaaaaaatatatttctttatagacaagcccaagcccaagctcggcccggt 30341477  T
Q  356 cggacggcg--------gtgcgctcgtgt--cttatatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttgg 445  Q
    |||||||||        | |||| |||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  30341476 cggacggcggcgtcgccgcgcgcgcgtgtgtcttatatataatttttggcaagcgctcactccgttcacaaaagtgtgtaccccaagggcacacccttgg 30341377  T
Q  446 aagtgatatcccgcatatataaacactactagagtgtgtgatctatctaatg 497  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  30341376 aagtgatatcccacatatataaacactactagagtgtgtgatctacctaatg 30341325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 3476816 - 3476537
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| | | ||    
T  3476816 agaaaagaatggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattcttgtttttggagtgaagaatcccattc 3476717  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    ||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||| | |||||||||| |||    
T  3476716 ccgagctctctatttatagagaggtttcgaccttgttttctccgctgacccggttcgcgacccgccaaacccagcccacgacccacgtaacggtaa-cca 3476618  T
Q  200 cgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggagc 279  Q
    ||||||||||||||||| | |||||||||||| ||| |||||||||| |||||||| ||||||||||||||| ||||||||    
T  3476617 cgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgtgggacttggtcctccgcgtgcgggaaactcggagc 3476537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 3482283 - 3482001
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | | ||    
T  3482283 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagataagaggattcgattctcggttttggagtgaagaatcccattc 3482184  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccac---gaccta-gtaacggtaat 196  Q
    ||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||| ||||  |||||||   |||| | ||||||||||     
T  3482183 ccgagctctctatttatagagaggtttcgacctcgttttctccgccgacccggttcgtgacccgctaaacccagcccaccacgacccacgtaacggtaa- 3482085  T
Q  197 ccacgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggagc 279  Q
    |||||||||||||||||||| | |||||||||||| ||| |||||||| | |||||||| ||||||||||||||| ||||||||    
T  3482084 ccacgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgcgggacttggtcctccgcgtgcgggaaactcggagc 3482001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 10321667 - 10321815
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||    
T  10321667 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaacctgagaagaggattcaattctcggttttggagtgaagaatgcaaatc 10321766  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgac 149  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10321767 ccgagctctctatttatagaggggatttgacctcgttttctccgccgac 10321815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 4117462 - 4117310
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | | ||    
T  4117462 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattc 4117363  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccgg 153  Q
    ||||||||||||||||||||| || || |||||||||||||||||||||||||    
T  4117362 ccgagctctctatttatagagaggtttcgacctcgttttctccgccgacccgg 4117310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 373 - 490
Target Start/End: Original strand, 17358468 - 17358585
Alignment:
Q  373 gtgtcttatatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacact 472  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||    
T  17358468 gtgtcttatatataatttttggcaagcgctcactccgttcacaaaagtgtgtaccccaaggggacacccttggaagtgatatcccacatatataaacact 17358567  T
Q  473 actagagtgtgtgatcta 490  Q
    ||||||||||||||||||    
T  17358568 actagagtgtgtgatcta 17358585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 374 - 490
Target Start/End: Complemental strand, 34128655 - 34128539
Alignment:
Q  374 tgtcttatatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacacta 473  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||| ||||||||||||||||| |||||||||||||||    
T  34128655 tgtcttatatataatttttggcaagcgctcactccgttcacaaaagtgtgtaccccaaaggcacactcttggaagtgatatcccacatatataaacacta 34128556  T
Q  474 ctagagtgtgtgatcta 490  Q
    |||||||||||||||||    
T  34128555 ctagagtgtgtgatcta 34128539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 373 - 490
Target Start/End: Complemental strand, 30338345 - 30338228
Alignment:
Q  373 gtgtcttatatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacact 472  Q
    |||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  30338345 gtgtcttatatataatgtttggcaaacgcacactccgttcacaaaagtgtgtaccccaagggcacacccttggaagtgatatcccacatatataaacact 30338246  T
Q  473 actagagtgtgtgatcta 490  Q
    ||||||||||||||||||    
T  30338245 actagagtgtgtgatcta 30338228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 3476429 - 3476320
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||    
T  3476429 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatttcccacatatataaacactactagagt 3476330  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  3476329 gtgtgatcta 3476320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 4117187 - 4117078
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||  ||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||    
T  4117187 tatataatttttggctagagctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatttcccacatatataaacactactagagt 4117088  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  4117087 gtgtgatcta 4117078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 15762833 - 15762717
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  15762833 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 15762734  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  15762733 cgagctctcaatttata 15762717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 15767994 - 15767878
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  15767994 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 15767895  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  15767894 cgagctctcaatttata 15767878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 20090465 - 20090349
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  20090465 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 20090366  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  20090365 cgagctctcaatttata 20090349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 20095590 - 20095474
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  20095590 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 20095491  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  20095490 cgagctctcaatttata 20095474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 3481886 - 3481777
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||| |||||  |||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||    
T  3481886 tatataatttttggctagcgctcactccgttcacagaagtggataccccaagggcacacccttggaagtgatttcccacatatataaacactactagagt 3481787  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  3481786 gtgtgatcta 3481777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 373 - 490
Target Start/End: Original strand, 54271221 - 54271331
Alignment:
Q  373 gtgtcttatatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacact 472  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||       ||||||||||||||    
T  54271221 gtgtcttttatataatttttggcaagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtga-------catatataaacact 54271313  T
Q  473 actagagtgtgtgatcta 490  Q
    ||||||||||||||||||    
T  54271314 actagagtgtgtgatcta 54271331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 17368957 - 17369074
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | |    
T  17368957 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactatt 17369055  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  17369056 cccgagctctcaatttata 17369074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 55129028 - 55129145
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | |    
T  55129028 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactatt 55129126  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  55129127 cccgagctctcaatttata 55129145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 10321816 - 10321865
Alignment:
Q  48 gaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaa 97  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  10321816 gaaaaccagagaagaggattcgattctcggttttggggtgaagaatgcaa 10321865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 470
Target Start/End: Original strand, 17358415 - 17358450
Alignment:
Q  435 cacacccttggaagtgatatcccgcatatataaaca 470  Q
    ||||||||||||||||||||||| ||||||||||||    
T  17358415 cacacccttggaagtgatatcccacatatataaaca 17358450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 3584825 - 3585104
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3584825 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatc 3584924  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    | ||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||  ||||||||||||| | |||||||||| |||    
T  3584925 ctgagctctctatttatagaggggatttgacctcgttttctctgcctacccggttcgcgacccgccaacgttagcccacgacccacgtaacggtaaccca 3585024  T
Q  200 cgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 279  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  3585025 cgacgcggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctctgcgtgcgggaatctcagagc 3585104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 279
Target Start/End: Original strand, 5730331 - 5730608
Alignment:
Q  3 aaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatccc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5730331 aaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatccc 5730430  T
Q  103 gagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatccacg 201  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||  ||||||||||||| | |||||||||| |||||    
T  5730431 gagctctctatttatagaggggatttgacctcattttctccgccgacccggttcgtgacccgccaacgttagcccacgacccacgtaacggtaacccacg 5730530  T
Q  202 acgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 279  Q
    ||||||||||||| | ||||||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||    
T  5730531 acgcggaaacgtgtagctgaagcttgcacgtgtggaaaacgtgtgagacttggtctctgtgtgcgggaatctcggagc 5730608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 48246554 - 48246392
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | | |     
T  48246554 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttgtagtgaagaatcccattt 48246455  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgaccc 163  Q
    ||||| ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||    
T  48246454 ccgaggtctctatttatagagaggatttgacctggttttctccaccgacccggttcgcgaccc 48246392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 372 - 490
Target Start/End: Original strand, 3585202 - 3585320
Alignment:
Q  372 cgtgtcttatatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacac 471  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||| |||||||||||||    
T  3585202 cgtgtcttatatataatttttggcaagcgctcactccgttcacaaaagtgtgtaccccaagggcacaccctcggaagtgatatcccacatatataaacac 3585301  T
Q  472 tactagagtgtgtgatcta 490  Q
    |||||||||||||||||||    
T  3585302 tactagagtgtgtgatcta 3585320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 48246209 - 48246100
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||| | ||||||||||||||||||||||    
T  48246209 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatatcgcacatatataaacactactagagt 48246110  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  48246109 gtgtgatcta 48246100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 402 - 490
Target Start/End: Original strand, 5730702 - 5730790
Alignment:
Q  402 tcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  5730702 tcactccgttcacaaaagtgtgtaccccaagggcacacccttgggagtgatatcccacatatataaacactactagagtgtgtgatcta 5730790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 34318088 - 34317972
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  34318088 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaagggcagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 34317989  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  34317988 cgagctctcaatttata 34317972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 36684518 - 36684402
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| |||||| | | |||    
T  36684518 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtcaagaatactattcc 36684419  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  36684418 cgagctctcaatttata 36684402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 27711561 - 27711678
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | |    
T  27711561 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactatt 27711659  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  27711660 cccgagctctcaatttata 27711678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 37404269 - 37404158
Alignment:
Q  8 aacggttcgtcaacacaaaccg--agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcccgag 105  Q
    ||||||||||||||||||||||  ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | ||||| |    
T  37404269 aacggttcgtcaacacaaaccgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccggg 37404171  T
Q  106 ctctctatttata 118  Q
    ||||| |||||||    
T  37404170 ctctcaatttata 37404158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 37409390 - 37409277
Alignment:
Q  8 aacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcccg 103  Q
    ||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||||    
T  37409390 aacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccg 37409292  T
Q  104 agctctctatttata 118  Q
    ||||||| |||||||    
T  37409291 agctctcaatttata 37409277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 27716681 - 27716798
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||| ||||  |||||||| || ||||||||||||||||| | | |    
T  27716681 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattatcagttttggagtgaagaatactatt 27716779  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  27716780 cccgagctctcaatttata 27716798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 11250980 - 11250863
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  |||||||||||  ||||||||| |||||| | | |    
T  11250980 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcaattttggagtaaagaatactatt 11250882  T
Q  100 cccgagctctctatttata 118  Q
    | ||||||||| |||||||    
T  11250881 cacgagctctcaatttata 11250863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 48246391 - 48246300
Alignment:
Q  185 agtaacggtaatccacgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 279  Q
    ||||||||||| |||||| | | ||||||||| |||||||||||||| || ||||||  ||||||||||||||| |||||| ||| |||||||||    
T  48246391 agtaacggtaacccacgatgtgaaaacgtggagctgaagcttgcgcgtgt-gaaaac--gtgagacttggtctcagcgtgcaggattctcggagc 48246300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 53797853 - 53798131
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  53797853 agaaaagaacagttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgctaatc 53797952  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||  |||||||||| ||||    
T  53797953 ccgagctctctatttatagaggggatttgacctcgttttatccgccgacccggttcgcgacccgccaacgttagcccacgacc-cgtaacggtaacccac 53798051  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgt-gcgggaatctcggagc 279  Q
    |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||    
T  53798052 gacgcggaaacgtggagctgaagcatgcgcgtgtggaaaacgtgtgagacttggtctctgcgtggcgggaatctcggagc 53798131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 41393469 - 41393747
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||    
T  41393469 agaaaagaacggttcgtcaacacaaaccgatggagatgag--ggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattc 41393566  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagt-aacggtaatcca 199  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||    
T  41393567 ccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacccagtaaacggtaaccca 41393666  T
Q  200 cgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggagc 279  Q
    ||||||||||||||||| ||||||||| |||  ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  41393667 cgacgcggaaacgtggagctgaagcttacgcatgtggaaaacgtgtgagacttggtcctccgcgtgcaggaatctcggagc 41393747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 9763888 - 9763609
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||    
T  9763888 agaaaagaacggttcgtcaacacaaaccgcgggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaataccaatc 9763789  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||| | |||||||||| |||    
T  9763788 ccgagctctctatttatagaggggattcgacttcgttttctcctccgacccggttcgcgacccgccaaacccagcccacgacccacgtaacggtaa-cca 9763690  T
Q  200 cgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggagc 279  Q
     |||||||||||||||| | |||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  9763689 tgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgggaatctcggagc 9763609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 13710893 - 13711172
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | | ||    
T  13710893 agaaaagaatggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattc 13710992  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    ||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||| | |||||||||| |||    
T  13710993 ccgagctctctatttatagagaggtttcgaccttgttttctccgctgacccggttcgcgacccgccaaacccagcccacgacccacgtaacggtaa-cca 13711091  T
Q  200 cgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggagc 279  Q
    ||||||||||||||||| | |||||||||||| ||| |||||||||| |||||||| ||||||||||||||| ||||||||    
T  13711092 cgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgtgggacttggtcctccgcgtgcgggaaactcggagc 13711172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 13695387 - 13695664
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| | | |||    
T  13695387 gaaaagaatggtttgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagagtattcgattctcggttttggagtgaagaatcccattcc 13695486  T
Q  102 cgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatccac 200  Q
    |||||||||||||||||||| || || |||||| ||||||||| ||| ||||||||||||||| |||||| ||||||||||| | |||||||||| ||||    
T  13695487 cgagctctctatttatagagaggtttcgacctcattttctccgtcgaaccggttcgcgacccggcaaactcagcccacgacccacgtaacggtaa-ccac 13695585  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggag 278  Q
    |||||||||||||||| | ||| |||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||    
T  13695586 gacgcggaaacgtggagcggaaacttgcgcgtgtgaaaaacgtgtgggacttggtcctccgcgtgcgggaatctcggag 13695664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 51019244 - 51019002
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||    
T  51019244 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattc 51019145  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||| ||||||||||||||| |||||| |||| ||||||||||||||            ||||| ||||||||||||||||| ||||||||||| ||||    
T  51019144 ccgaggtctctatttatagagaggattttaccttgttttctccgccga------------cccgcgaaacttagcccacgacccagtaacggtaacccac 51019057  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtct 257  Q
    |||||||||||||||| |||||||||||||| |||  ||||||||||||||||||||    
T  51019056 gacgcggaaacgtggagctgaagcttgcgcgtgtg--aaacgtgtgagacttggtct 51019002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 47046177 - 47045910
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||    
T  47046177 agaaaagaacggttcgtcaacacaacctgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatcccattc 47046078  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    ||||||||||||||||||||| || || ||||||||||||||||||||            ||||||||||  ||||||||||| | |||||||||| |||    
T  47046077 ccgagctctctatttatagagaggtttcgacctcgttttctccgccga------------cccgccaaacccagcccacgacccacgtaacggtaa-cca 47045991  T
Q  200 cgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggagc 279  Q
    ||||||||||||||||| | |||||||||||| ||| |||||||| | |||||||| ||||||||||||||| || |||||    
T  47045990 cgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgcgggacttggtcctccgcgtgcgggaaacttggagc 47045910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 309 - 490
Target Start/End: Original strand, 53798161 - 53798348
Alignment:
Q  309 ctgagcaccaaaaaatatatttctttatagcccaagcccggcccggtcggacggcgg---tgcgctcg----tgtcttatatataatttttggcaagctc 401  Q
    |||||||||||||||||||||||||||||| | ||||||   |||||||||||| ||   ||||| ||    ||||||||||||||||||| ||||||      
T  53798161 ctgagcaccaaaaaatatatttctttatagac-aagcccaagccggtcggacggtggcgttgcgcgcgcgtgtgtcttatatataattttttgcaagcgt 53798259  T
Q  402 tcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53798260 tcactccgttcacaaaagtgtgtaccccaaaggcacacccttggaagtgatatcccacatatataaacactactagagtgtgtgatcta 53798348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 9763510 - 9763401
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||||||||||| |||||||||| ||||||||||||||||||||||    
T  9763510 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaggtgatatccctcatatataaacactactagagt 9763411  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  9763410 gtgtgatcta 9763401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 381 - 490
Target Start/End: Original strand, 13711280 - 13711389
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||    
T  13711280 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatttcccacatatataaacactactagagt 13711379  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  13711380 gtgtgatcta 13711389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 375 - 490
Target Start/End: Original strand, 41393764 - 41393877
Alignment:
Q  375 gtcttatatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactac 474  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||  ||| | ||||||||||||||||    
T  41393764 gtcttatatataatttttggcaagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtg--atcacacatatataaacactac 41393861  T
Q  475 tagagtgtgtgatcta 490  Q
    ||||||||||||||||    
T  41393862 tagagtgtgtgatcta 41393877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 381 - 497
Target Start/End: Complemental strand, 47045856 - 47045741
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||||| |||  ||||||||||||||||||||||| ||||||||||||||||||||||    
T  47045856 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccc-aagggcacacccttggaagtgatatcccacatatataaacactactagagt 47045758  T
Q  481 gtgtgatctatctaatg 497  Q
    |||||||||||| ||||    
T  47045757 gtgtgatctatccaatg 47045741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 51018942 - 51018834
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||||| |||  ||||||||||||||||||||||| ||||||||||||||||||||||    
T  51018942 tatataatttttggctagcgctcactccgttcacaaaagtgcgtaccc-aagggcacacccttggaagtgatatcccacatatataaacactactagagt 51018844  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  51018843 gtgtgatcta 51018834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 39999361 - 39999477
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  39999361 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 39999460  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  39999461 cgagctctcaatttata 39999477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 40004319 - 40004435
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  40004319 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 40004418  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  40004419 cgagctctcaatttata 40004435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 54343495 - 54343611
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  54343495 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 54343594  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  54343595 cgagctctcaatttata 54343611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 54348649 - 54348765
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  54348649 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 54348748  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  54348749 cgagctctcaatttata 54348765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 36354434 - 36354560
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| |||||| | | | |    
T  36354434 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactatttc 36354533  T
Q  102 cgagctctctatttatagagtggattt 128  Q
     |||||||| ||||||| || ||||||    
T  36354534 tgagctctcaatttataaagaggattt 36354560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 36359620 - 36359736
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| |||||| | | |||    
T  36359620 gaaaagaacgattcgttaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcc 36359719  T
Q  102 cgagctctctatttata 118  Q
     |||||||| |||||||    
T  36359720 tgagctctcaatttata 36359736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 389 - 490
Target Start/End: Original strand, 4206960 - 4207061
Alignment:
Q  389 ttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgatc 488  Q
    ||||||| |||  |||||| ||||||||||||| ||||||||||  |||||||||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  4206960 ttttggctagcattcactctgttcacaaaagtgggtaccccaagggcacacccttgaaagtgatttcccacatatataaacactactagagtgtgtgatc 4207059  T
Q  489 ta 490  Q
    ||    
T  4207060 ta 4207061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 8985262 - 8985145
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | |    
T  8985262 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactatt 8985164  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  8985163 cccgagctctcaatttata 8985145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 13700748 - 13700865
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | |    
T  13700748 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactatt 13700846  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  13700847 cccgagctctcaatttata 13700865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 21304810 - 21304693
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | |    
T  21304810 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactatt 21304712  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  21304711 cccgagctctcaatttata 21304693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 8980142 - 8980025
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | |    
T  8980142 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactatt 8980044  T
Q  100 cccgagctctctatttata 118  Q
    | ||||||||| |||||||    
T  8980043 ctcgagctctcaatttata 8980025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 21299690 - 21299573
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| |||||||||| |||||| | | |    
T  21299690 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactatt 21299592  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  21299591 cccgagctctcaatttata 21299573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 54991714 - 54991831
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| |||||| |||||||||| | | |    
T  54991714 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttgaagtgaagaatactatt 54991812  T
Q  100 cccgagctctctatttata 118  Q
    |||||||| || |||||||    
T  54991813 cccgagctttcaatttata 54991831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 435 - 490
Target Start/End: Original strand, 13695721 - 13695776
Alignment:
Q  435 cacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  13695721 cacacccttggaagtgatttcccacatatataaacactactagagtgtgtgatcta 13695776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 54990667 - 54990550
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccgagggag--atgaga-aggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||| |||||  |  ||| ||| |||||||| ||||||||  ||| ||||||| ||||||||||||||||| | |  |    
T  54990667 aaagaacggttcgtcaacacaaaccgcgggagggagtagagaggagagaaaacaagagaagagtatttgattctcagttttggagtgaagaatactatac 54990568  T
Q  101 ccgagctctctatttata 118  Q
    |||||||||| |||||||    
T  54990567 ccgagctctcaatttata 54990550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 4205920 - 4205972
Alignment:
Q  131 cctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacc 183  Q
    |||| ||||||||||||||||||||| |||||||| ||||  |||||||||||    
T  4205920 cctcattttctccgccgacccggttcacgacccgctaaacccagcccacgacc 4205972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 4206071 - 4206115
Alignment:
Q  389 ttttggcaagctctcactccgttcacaaaagtgtgtaccccaagc 433  Q
    ||||||| ||| ||||||| ||||||||||||| |||||||||||    
T  4206071 ttttggctagcgctcactctgttcacaaaagtgggtaccccaagc 4206115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 2818018 - 2817739
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||   | ||    
T  2818018 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattcttggttttggagtaaagaatctcattc 2817919  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| | |||||||||| |||    
T  2817918 ccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaacgttagcccacgacccacgtaacggtaaccca 2817819  T
Q  200 cgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 279  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||    
T  2817818 cgacgcggaaacgtggagctgaagcttgcgcgtgtggaaaacgggtgagacttggtctccgcgtgtgggaatctcggagc 2817739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 2 - 276
Target Start/End: Original strand, 31981788 - 31982063
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| | |||||    
T  31981788 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagagtattcgattctcggttttggagtgaagaataccaatcc 31981887  T
Q  102 cgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatccac 200  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||  | ||||||||| | |||||||||| ||||    
T  31981888 cgagctctctatttatagaggggattcgacttcgttttctccgccgacccggttcgcgacccgccaaacccatcccacgacccacgtaacggtaa-ccac 31981986  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcgg 276  Q
    |||||| ||||||||| | ||||||||| || ||| |||| |||||||||||||| |||||||||||||||||||||    
T  31981987 gacgcgaaaacgtggagcggaagcttgcacgtgtgaaaaatgtgtgagacttggtcctccgcgtgcgggaatctcgg 31982063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 34142313 - 34142591
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||    
T  34142313 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaattc 34142412  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    |||||| || ||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||||| |||    
T  34142413 ccgagcactttatttatagaggggaattttcctcgttttctccgccgacccggttcgcgacccgccaaactcagcccacgacccacgtaatggtaa-cca 34142511  T
Q  200 cgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggag 278  Q
    |||||||||||||||||   ||||||||| || ||| |||||||||| || ||||| ||||| ||||||||| |||||||    
T  34142512 cgacgcggaaacgtggagaggaagcttgcacgtgtgaaaaacgtgtgggatttggtcctccgtgtgcgggaaactcggag 34142591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 34154929 - 34155207
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||    
T  34154929 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaattc 34155028  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    |||||| || ||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||||| |||    
T  34155029 ccgagcactttatttatagaggggaattttcctcgttttctccgccgacccggttcgcgacccgccaaactcagcccacgacccacgtaatggtaa-cca 34155127  T
Q  200 cgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggag 278  Q
    |||||||||||||||||   ||||||||| || ||| |||||||||| || ||||| ||||| ||||||||| |||||||    
T  34155128 cgacgcggaaacgtggagaggaagcttgcacgtgtgaaaaacgtgtgggatttggtcctccgtgtgcgggaaactcggag 34155207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 34376153 - 34376322
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||    
T  34376153 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattc 34376252  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaac 170  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||||||||    
T  34376253 ccgagctctctatttatagaggggaattttcctcgttttctccgccgacccggttcgcgacccgccaaac 34376322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 309 - 490
Target Start/End: Complemental strand, 2817710 - 2817529
Alignment:
Q  309 ctgagcaccaaaaaatatatttctttatagcccaagcccggcccggtcggacggcggtgcgctcgtgt--cttatatataatttttggcaagctctcact 406  Q
    |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||  |||| |||||  ||||||||||||||||||||||| ||||||    
T  2817710 ctgagcaccaaaaa-tatatttctttatagcccaagcccggtccg-tcggacggcgtcgcgcgcgtgtgtcttatatataatttttggcaagcgctcact 2817613  T
Q  407 ccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2817612 ccgttcacaaaagtgtgtaccccaagggcacacccttggaagtgatatcccacatatataaacactactagagtgtgtgatcta 2817529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 24191243 - 24191080
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | | ||    
T  24191243 agaaaaaaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattc 24191144  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccg 164  Q
    ||||||||||||||||||||| || || ||||||||||||| || |||||||||||||||||||    
T  24191143 ccgagctctctatttatagagaggtttcgacctcgttttcttcgtcgacccggttcgcgacccg 24191080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 24192340 - 24192188
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | | ||    
T  24192340 agaaaaaaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattc 24192241  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccgg 153  Q
    ||||||||||||||||||||| || || ||||||||||||| || ||||||||    
T  24192240 ccgagctctctatttatagagaggtttcgacctcgttttcttcgtcgacccgg 24192188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 381 - 490
Target Start/End: Original strand, 34142691 - 34142800
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||    
T  34142691 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatttcccacatatataaacactactagagt 34142790  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  34142791 gtgtgatcta 34142800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 381 - 490
Target Start/End: Original strand, 34155307 - 34155416
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||    
T  34155307 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatttcccacatatataaacactactagagt 34155406  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  34155407 gtgtgatcta 34155416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 22698046 - 22697930
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  22698046 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 22697947  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  22697946 cgagctctcaatttata 22697930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 6728014 - 6727905
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||||  ||||||||||| |||| ||||||||||||||||||||||    
T  6728014 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacatttggaagtgatttcccacatatataaacactactagagt 6727915  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  6727914 gtgtgatcta 6727905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 24190892 - 24190783
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| |||||||||||| |||||||| ||||||||||   ||||||||||||||||| |||| ||||||||||||||||||||||    
T  24190892 tatataatttttggctagcgctcactccgttcccaaaagtgggtaccccaaggggacacccttggaagtgatttcccacatatataaacactactagagt 24190793  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  24190792 gtgtgatcta 24190783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 381 - 490
Target Start/End: Original strand, 34376374 - 34376483
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||  ||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||    
T  34376374 tatataatttttggctagtgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatttcccacatatataaacactactagagt 34376473  T
Q  481 gtgtgatcta 490  Q
    |||| |||||    
T  34376474 gtgttatcta 34376483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 381 - 472
Target Start/End: Original strand, 31982089 - 31982180
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacact 472  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||||| ||||||||||||||    
T  31982089 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacgcccttggaagtgatatcccacatatataaacact 31982180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 6728247 - 6728159
Alignment:
Q  64 gattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttatagagtggatttgacctcgttttctccgccgacccg 152  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| || || ||||||||||||||||| ||||||    
T  6728247 gattcgattctcggttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgacctcgttttctccgctgacccg 6728159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 22703223 - 22703106
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | |    
T  22703223 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactatt 22703125  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  22703124 cccgagctctcaatttata 22703106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 24191066 - 24191008
Alignment:
Q  221 aagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggag 278  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  24191066 aagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgggaatctcggag 24191008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 24192175 - 24192117
Alignment:
Q  221 aagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggag 278  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  24192175 aagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgggaatctcggag 24192117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 21401979 - 21402096
Alignment:
Q  4 aaagaacggttcgtcaacacaaacc----gagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    |||||||||||||||||||||||||    |||||||| ||| ||| |||||||||| ||||||  ||||||||||  ||||| |||||| |||| | | |    
T  21401979 aaagaacggttcgtcaacacaaaccgcaggagggagaagag-aggagagaaaaccaaagaagagtattcgattcttagtttttgagtgatgaatactatt 21402077  T
Q  100 cccgagctctctatttata 118  Q
    ||| ||||||| |||||||    
T  21402078 cccaagctctcaatttata 21402096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 29491094 - 29491005
Alignment:
Q  3 aaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaa 89  Q
    |||||||||||||||||||||||||||    ||||||| |||| || || |||| |||||||||  ||| ||||||| |||||||||||||    
T  29491094 aaaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagataaaatcagagaagagtatttgattctcagttttggagtgaa 29491005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 9079 - 8818
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| | | ||    
T  9079 agaaaagaacagttcgtcaacacaaaccgagggagatgagaaggggagaaaactagagaagaggattcgattctcgtttttggagtgaagaatcccattc 8980  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  8979 ccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgactcagtaacggtaacccac 8880  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcg 262  Q
    |||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||    
T  8879 gacgcggaaacgtggagctgaagcttgcgcgtgtggaaaatgtgtgagacttggtctccgcg 8818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 401 - 490
Target Start/End: Complemental strand, 8751 - 8662
Alignment:
Q  401 ctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  8751 ctcactccgttcacaaaagtgggtaccccaagggcacacccttgaaagtgatatcccacatatataaacactactagagtgtgtgatcta 8662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 198; Significance: 1e-107; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 4163448 - 4163182
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4163448 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatc 4163349  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||||||||||||||||||| |||||| |||| ||||||||||||||            ||||||||  ||||||||||||| ||||||||||| ||||    
T  4163348 ccgagctctctatttatagaggggatttaaccttgttttctccgccga------------cccgccaacgttagcccacgacccagtaacggtaacccac 4163261  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 279  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4163260 gacgcggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 4163182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 28751600 - 28751343
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||   | ||    
T  28751600 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatctcattc 28751501  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||                     ||||||||||| ||||    
T  28751500 ccgagctctctatttatagaggggatttgacctcgttttctccgccgacctggttcgcgaccc---------------------agtaacggtaacccac 28751422  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 279  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28751421 gacgcggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 28751343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 42728423 - 42728307
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  42728423 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 42728324  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  42728323 cgagctctcaatttata 42728307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 42723254 - 42723138
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    ||||||||||  ||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  42723254 gaaaagaacgactcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 42723155  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  42723154 cgagctctcaatttata 42723138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 44096594 - 44096710
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| |||||| | | |||    
T  44096594 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcc 44096693  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  44096694 cgagctctcaatttata 44096710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 419 - 490
Target Start/End: Complemental strand, 4163094 - 4163023
Alignment:
Q  419 gtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4163094 gtgtgtaccccaagggcacacccttggaagtgatatcccacatatataaacactactagagtgtgtgatcta 4163023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 435 - 490
Target Start/End: Complemental strand, 28751204 - 28751149
Alignment:
Q  435 cacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28751204 cacacccttggaagtgatatcccacatatataaacactactagagtgtgtgatcta 28751149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 40392557 - 40392674
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || ||||||| ||||||| |  ||||||||||| ||||||||||||||||| | | |    
T  40392557 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaatcagagaaaagtattcgattctcagttttggagtgaagaatactatt 40392655  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  40392656 cccgagctctcaatttata 40392674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 40518329 - 40518213
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||| ||||||||  ||||||||||| ||||||||||||||||| | | |    
T  40518329 aaagaacggttcgtcaacacaaaccgctggagggagaagaga-ggagagaaaacaagagaagagtattcgattctcagttttggagtgaagaatactatt 40518231  T
Q  100 cccgagctctctatttat 117  Q
    | ||||||||| ||||||    
T  40518230 cacgagctctcaatttat 40518213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 44754399 - 44754293
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||          ||||||  ||||||||||| ||||||||||||||||| | | |||    
T  44754399 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaagggg----------agaagagtattcgattctcagttttggagtgaagaatactattcc 44754310  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  44754309 cgagctctcaatttata 44754293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 44759565 - 44759459
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||          ||||||  ||||||||||| ||||||||||||||||| | | |||    
T  44759565 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaagggg----------agaagagtattcgattctcagttttggagtgaagaatactattcc 44759476  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  44759475 cgagctctcaatttata 44759459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 40519925 - 40519987
Alignment:
Q  55 agagaagatgattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttat 117  Q
    ||||||||  ||||||||||| ||||||||||||||||| | | |||||||||||| ||||||    
T  40519925 agagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttat 40519987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 416
Target Start/End: Complemental strand, 28751246 - 28751208
Alignment:
Q  378 ttatatataatttttggcaagctctcactccgttcacaa 416  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  28751246 ttatatataatttttggtaagcgctcactccgttcacaa 28751208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 338
Target Start/End: Complemental strand, 4163153 - 4163124
Alignment:
Q  309 ctgagcaccaaaaaatatatttctttatag 338  Q
    ||||||||||||||||||||||||||||||    
T  4163153 ctgagcaccaaaaaatatatttctttatag 4163124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 37234 - 37513
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   | ||    
T  37234 agaaaagaacggttcgtcaacacaaaccgaggaagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatctcattc 37333  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||| |||    
T  37334 ccgagctctctatttatagagaggatttgacctcgttttctccgccgacctggttcgcgacccgccaaactcagcccacgacccacgtaacggtaa-cca 37432  T
Q  200 cgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggagc 279  Q
    ||||||||||||||||| | ||||||| |||| ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  37433 cgacgcggaaacgtggagcggaagcttccgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgggaatctcggagc 37513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 388 - 490
Target Start/End: Original strand, 37572 - 37673
Alignment:
Q  388 tttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgat 487  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||  |||||  ||| | |||||||||| ||||||||||||||||| |||||||||||    
T  37572 tttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacttttg-aggtgatatcccacatatataaacactactggagtgtgtgat 37670  T
Q  488 cta 490  Q
    |||    
T  37671 cta 37673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 42572170 - 42572447
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |||    
T  42572170 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcc 42572269  T
Q  102 cgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatccac 200  Q
    |||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| ||||    
T  42572270 cgagttctctatttatagagaggtttcgacctcgttttctccgccgacccggttcgcgacccggcaaactcagcccacgacccacgtaacggtaa-ccac 42572368  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggag 278  Q
    |||||||||||||||| | |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  42572369 gacgcggaaacgtggagcagaagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgggaatctcggag 42572447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 21080910 - 21080643
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||    
T  21080910 agaaaagaacggttcgtcaacacaaaccgaggaagatgagaaggggagaaaaccagagaagaggattcgattctcagttttgaagtgaagaatgcaaatc 21080811  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||| || |||||||| ||||    
T  21080810 ccgagctctctatttatagaggggatttgacctcgttttctccaccgacccggttcgcgacccgccaacgttagcccacgacccagcaacggtaacccac 21080711  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 279  Q
    |||| ||||||||||||||||||||||||           |||||||||||||||||||| ||||||||||||||||||    
T  21080710 gacgtggaaacgtggaactgaagcttgcg-----------cgtgtgagacttggtctccgtgtgcgggaatctcggagc 21080643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 16539283 - 16539005
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||||||||||||||||||||| | | ||    
T  16539283 agaaaagaactgttcgtcaacacaaaccgagggagatgagaatgggagaaaaccagagaagaggatttaattctcggttttggagtgaagaatcccattc 16539184  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  16539183 ccgagctctctatttatagaggggaattttcctcgttttctccgccgacctggttcgcgacccgcgaaacttagcccacgacccagtaacggtaa-ccac 16539085  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggagc 279  Q
    |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||    
T  16539084 gacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgggaatcgcggagc 16539005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 16626379 - 16626657
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||||||||||||||||||||| | | ||    
T  16626379 agaaaagaactgttcgtcaacacaaaccgagggagatgagaatgggagaaaaccagagaagaggatttaattctcggttttggagtgaagaatcccattc 16626478  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  16626479 ccgagctctctatttatagaggggaattttcctcgttttctccgccgacctggttcgcgacccgcgaaacttagcccacgacccagtaacggtaa-ccac 16626577  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggagc 279  Q
    |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||    
T  16626578 gacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgggaatcgcggagc 16626657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 12934621 - 12934899
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||    
T  12934621 agaaaagaacggttcatcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattc 12934720  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    |||||||||||||||||||||  | || |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||| |||    
T  12934721 ccgagctctctatttatagagatgtttcgacctcgttttctccgccgacccggttcgcgacccggcaaactcagcccacgacccacgtaacggtaa-cca 12934819  T
Q  200 cgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggag 278  Q
    || |||||||||||||| | |||||||||||| ||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  12934820 cggcgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgggaatatcggag 12934899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 2 - 279
Target Start/End: Complemental strand, 19309481 - 19309203
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | | |||    
T  19309481 gaaaagaacagttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggatttgattctcggttttggagtgaagaatcccattcc 19309382  T
Q  102 cgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatccac 200  Q
    |||||||||||||||||||| ||| ||  ||||||||||||||||||||||| ||||||||||||||||  ||||||||||| | |||||||||| ||||    
T  19309381 cgagctctctatttatagaggggaattttcctcgttttctccgccgacccggctcgcgacccgccaaacccagcccacgacccacgtaacggtaa-ccac 19309283  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggagc 279  Q
    |||||||||||||||| | |||||||||||| ||| |||||||| | |||||||| | ||||||||||||| ||||||||    
T  19309282 gacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgcgggacttggtccgccgcgtgcgggaaactcggagc 19309203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 17495627 - 17495840
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| | | ||    
T  17495627 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggcgagaaaaccagagaagaggattcaattctcggttttggagtaaagaatcccattc 17495726  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||| |||    
T  17495727 ccgagctctctatttatagaggggaattttcctcgttttctccgccgacccggttcgcgacccgccaaactcagcccacgacccacataacggtaa-cca 17495825  T
Q  200 cgacgcggaaacgtg 214  Q
    | |||||||||||||    
T  17495826 ccacgcggaaacgtg 17495840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 17557587 - 17557374
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| | | ||    
T  17557587 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggcgagaaaaccagagaagaggattcaattctcggttttggagtaaagaatcccattc 17557488  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||| |||    
T  17557487 ccgagctctctatttatagaggggaattttcctcgttttctccgccgacccggttcgcgacccgccaaactcagcccacgacccacataacggtaa-cca 17557389  T
Q  200 cgacgcggaaacgtg 214  Q
    | |||||||||||||    
T  17557388 ccacgcggaaacgtg 17557374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 43893093 - 43893298
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | | ||    
T  43893093 agaaaagaacgattcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcgattttggagtgaagaatcccattc 43893192  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    ||||||||||||||||||| | ||| ||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||| | |||||||||| |||    
T  43893193 ccgagctctctatttatagcggggaattttcctcgttttctccgccgacccggttcgcgacccgccaaacccagcccacgacccacgtaacggtaa-cca 43893291  T
Q  200 cgacgcg 206  Q
    |||||||    
T  43893292 cgacgcg 43893298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 2234501 - 2234332
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||    
T  2234501 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatactaatc 2234402  T
Q  101 ccgagctctctatttatagagtggatttgacctc-------gttttctccgccgacccggttcgcgaccc 163  Q
    ||||||||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||    
T  2234401 ccgagctctctatttatagaggggatttgacctcgtttctcgttttctccgccgacccggttcgcgaccc 2234332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 47177003 - 47176852
Alignment:
Q  19 aacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||   | ||||||||||||||||||||    
T  47177003 aacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattatcggttttggagtgaagaatctcattcccgagctctctatttata 47176904  T
Q  119 gagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaac 170  Q
    ||| || || ||||| ||||||||||||||||||||||||||||||||||||    
T  47176903 gagaggtttcgaccttgttttctccgccgacccggttcgcgacccgccaaac 47176852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 352 - 490
Target Start/End: Complemental strand, 32212231 - 32212093
Alignment:
Q  352 cggtcggacggcggtg-cgctcgtgtcttatatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtg 450  Q
    |||||||||||||| | ||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32212231 cggtcggacggcggcgtcgcgcgtgtcttatatataatttt-ggcaagcgctcactccgttcacaaaagtgggtaccccaagcacacacccttggaagtg 32212133  T
Q  451 atatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  32212132 atatcccacatatataaacactactagagtgtgtgatcta 32212093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 320 - 490
Target Start/End: Complemental strand, 2234251 - 2234080
Alignment:
Q  320 aaaatatatttctttatagcccaagcccggcccg--gtcggacggcggtgcgctcgtgtcttatatataatttttggcaagctctcactccgttcacaaa 417  Q
    |||||||||||||||||||||||||||||| | |  | ||| || ||  ||||  ||||||||||||||||||||||||||| |||||||||||||||||    
T  2234251 aaaatatatttctttatagcccaagcccggtcggacgacgg-cgtcgccgcgcatgtgtcttatatataatttttggcaagcgctcactccgttcacaaa 2234153  T
Q  418 agtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    |||||||||||||||   ||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  2234152 agtgtgtaccccaagggaacacccttggaagtgatatcccatatatataaacactactagagtgtgtgatcta 2234080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 373 - 490
Target Start/End: Complemental strand, 21080566 - 21080449
Alignment:
Q  373 gtgtcttatatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacact 472  Q
    |||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  21080566 gtgtcttatatataatttttagcaagcgctcactccattcacaaaagtgtgtaccccaagggcacacccttggaagtgatatcccacatatataaacact 21080467  T
Q  473 actagagtgtgtgatcta 490  Q
    ||||||||||||||||||    
T  21080466 actagagtgtgtgatcta 21080449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 367 - 490
Target Start/End: Complemental strand, 16538924 - 16538801
Alignment:
Q  367 gcgctcgtgtcttatatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatata 466  Q
    |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||    
T  16538924 gcgcgcgtgtcttatatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatatcccacatatata 16538825  T
Q  467 aacactactagagtgtgtgatcta 490  Q
    ||||||| || |||||||||||||    
T  16538824 aacactattaaagtgtgtgatcta 16538801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 367 - 490
Target Start/End: Original strand, 16626738 - 16626861
Alignment:
Q  367 gcgctcgtgtcttatatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatata 466  Q
    |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||    
T  16626738 gcgcgcgtgtcttatatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatatcccacatatata 16626837  T
Q  467 aacactactagagtgtgtgatcta 490  Q
    ||||||| || |||||||||||||    
T  16626838 aacactattaaagtgtgtgatcta 16626861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 381 - 490
Target Start/End: Original strand, 17496010 - 17496119
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||    
T  17496010 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatatcccacatatataaacactactagagt 17496109  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  17496110 gtgtgatcta 17496119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 17557204 - 17557095
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||    
T  17557204 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatatcccacatatataaacactactagagt 17557105  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  17557104 gtgtgatcta 17557095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 32212524 - 32212419
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | | ||    
T  32212524 agaaaagaacggttcatcaacacaaaccgagggagatgagaaggggagaaaatcagagaagaggattcgattctcggttttggagtgaagaatcccattc 32212425  T
Q  101 ccgagc 106  Q
    ||||||    
T  32212424 ccgagc 32212419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 381 - 490
Target Start/End: Original strand, 43893452 - 43893561
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||    
T  43893452 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatttcccacatatataaacactactagagt 43893551  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  43893552 gtgtgatcta 43893561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 309 - 490
Target Start/End: Original strand, 12934927 - 12935103
Alignment:
Q  309 ctgagcaccaaaaaatatatttctttatagcccaagcccggcccggtcggacggcggtgcgctcgtgtcttatatataatttttggcaagctctcactcc 408  Q
    |||||||||||||||||||||||| || || || ||||| ||||||||  |||||| ||||| ||  |    ||||||||||||||| ||| ||||||||    
T  12934927 ctgagcaccaaaaaatatatttctata-aggcccagcccagcccggtcaaacggcgttgcgcgcggct----tatataatttttggctagcgctcactcc 12935021  T
Q  409 gttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    ||||||||||||| ||||||||||  |||||| ||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  12935022 gttcacaaaagtgggtaccccaagggcacaccattggaagtgatttcccacatatataaacactactaaagtgtgtgatcta 12935103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 381 - 497
Target Start/End: Complemental strand, 19309113 - 19308997
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||  ||||||||||  |||| ||||||||||||| |||| ||||||||||||||||||||||    
T  19309113 tatataatttttggctagcgctcactccgttcacaaaagtaggtaccccaagggcacatccttggaagtgatttcccacatatataaacactactagagt 19309014  T
Q  481 gtgtgatctatctaatg 497  Q
    |||||||||||| ||||    
T  19309013 gtgtgatctatccaatg 19308997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 33238294 - 33238410
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  33238294 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 33238393  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  33238394 cgagctctcaatttata 33238410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 47994092 - 47994208
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  47994092 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 47994191  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  47994192 cgagctctcaatttata 47994208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 47999267 - 47999383
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  47999267 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 47999366  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  47999367 cgagctctcaatttata 47999383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 33243471 - 33243587
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  33243471 gaaaagaacgatttgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 33243570  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  33243571 cgagctctcaatttata 33243587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 173 - 275
Target Start/End: Complemental strand, 32212421 - 32212318
Alignment:
Q  173 agcccacgacctagtaacggtaatccacgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaat 271  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  32212421 agccctcgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttgatcctccgcgtgcgggaat 32212322  T
Q  272 ctcg 275  Q
    ||||    
T  32212321 ctcg 32212318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 401 - 490
Target Start/End: Complemental strand, 47176712 - 47176624
Alignment:
Q  401 ctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    ||||||||||||||||||||| |||||| |||  ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  47176712 ctcactccgttcacaaaagtgggtaccc-aagggcactcccttggaagtgatttcccacatatataaacactactagagtgtgtgatcta 47176624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 414 - 490
Target Start/End: Original strand, 42572543 - 42572619
Alignment:
Q  414 caaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    |||||||| ||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  42572543 caaaagtgggtaccccaagggcacacccttggaagtgatttcccacatatataaacactactagagtgtgtgatcta 42572619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 13610 - 13331
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | | ||    
T  13610 agaaaagaatggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattc 13511  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatcca 199  Q
    ||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||| | |||||||||| |||    
T  13510 ccgagctctctatttatagagaggtttcgaccttgttttctccgctgacccggttcgcgacccgccaaacccagcccacgacccacgtaacggtaa-cca 13412  T
Q  200 cgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggagc 279  Q
    ||||||||||||||||| | |||||||||||| ||| |||||||||| |||||||| ||||||||||||||| ||||||||    
T  13411 cgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgtgggacttggtcctccgcgtgcgggaaactcggagc 13331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 19062 - 18835
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||| | |||||    
T  19062 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcc 18963  T
Q  102 cgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatccac 200  Q
     ||||||||||||||||||| ||||| ||| |||||||||||| |||||||||||| ||||||||||||  ||||||||||| | |||||||||| ||||    
T  18962 tgagctctctatttatagaggggattcgacttcgttttctccgtcgacccggttcgtgacccgccaaacccagcccacgacccacgtaacggtaa-ccac 18864  T
Q  201 gacgcggaaacgtggaactgaagcttgcg 229  Q
    |||||||||||||||| | ||||||||||    
T  18863 gacgcggaaacgtggagcggaagcttgcg 18835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 13223 - 13114
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||    
T  13223 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatttcccacatatataaacactactagagt 13124  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  13123 gtgtgatcta 13114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 18680 - 18571
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||    
T  18680 tatataatttttggctagcgctcactccgttaacaaaagtgggtaccccaagggcacacccttggaagtgatatcccacatatataaacactactagagt 18581  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  18580 gtgtgatcta 18571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 1413923 - 1413710
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | | ||    
T  1413923 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagataagaggattcgattctcggttttggagtgaagaatcccattc 1413824  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  1413823 ccgagctctctatttatagaggggatttgacctcgtttacttcgccgacccggttcgcgacccgccaaacttagcccacgacccaataacggtaacccac 1413724  T
Q  201 gacgcggaaacgtg 214  Q
    ||||||||||||||    
T  1413723 gacgcggaaacgtg 1413710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 26709327 - 26709584
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||||||||||||||||||||    
T  26709327 agaaaagaatggttcatcaacacaaaccgagggagatgagaaggggagaaaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatc 26709426  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||                     || |||||||| ||||    
T  26709427 ccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgaccc---------------------agcaacggtaacccac 26709505  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 279  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  26709506 gacgcagaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgtgtgcgggaatctcggagc 26709584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 26979061 - 26979318
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||||||||||||||||||||    
T  26979061 agaaaagaatggttcatcaacacaaaccgagggagatgagaaggggagaaaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatc 26979160  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||                     || |||||||| ||||    
T  26979161 ccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgaccc---------------------agcaacggtaacccac 26979239  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 279  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  26979240 gacgcagaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgtgtgcgggaatctcggagc 26979318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 36254060 - 36254332
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||| | | ||    
T  36254060 agaaaagaacggttcgtcaacacaaactgagggagatgagaaagggagaaaactagagaagaggattcgattctcggttttggagtgaagaatcccattc 36254159  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    || |||||||||||||||||| ||| ||  |||| |||||||| ||||||||| ||||||||||||||||| |||||||      |||||||||| ||||    
T  36254160 ccaagctctctatttatagaggggaattttcctcattttctccaccgacccggctcgcgacccgccaaactcagcccac------gtaacggtaa-ccac 36254252  T
Q  201 gacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtc-tccgcgtgcgggaatctcggagc 279  Q
    |||||||||||||||| | |||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| ||||    
T  36254253 gacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgtgagacttggtcttccgcgtgcgggaatctcagagc 36254332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 24776679 - 24776452
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||| | |||||    
T  24776679 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcc 24776580  T
Q  102 cgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatccac 200  Q
     ||||||||||||||||||| ||||| ||| |||||||||||| |||||||||||| ||||||||||||  ||||||||||| | |||||||||| ||||    
T  24776579 tgagctctctatttatagaggggattcgacttcgttttctccgtcgacccggttcgtgacccgccaaacccagcccacgacccacgtaacggtaa-ccac 24776481  T
Q  201 gacgcggaaacgtggaactgaagcttgcg 229  Q
    |||||||||||||||| | ||||||||||    
T  24776480 gacgcggaaacgtggagcggaagcttgcg 24776452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 24771224 - 24770997
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||| ||||||||||| |||||| | |||||    
T  24771224 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagagtgtttgattcttggttttggagtaaagaataccaatcc 24771125  T
Q  102 cgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccta-gtaacggtaatccac 200  Q
     ||||||||||||||||||| ||||| ||| |||||||||| | |||||||||| | ||||||||||||  ||||||||||| | |||||||||| ||||    
T  24771124 tgagctctctatttatagaggggattcgacttcgttttctctgtcgacccggtttgtgacccgccaaacccagcccacgacccacgtaacggtaa-ccac 24771026  T
Q  201 gacgcggaaacgtggaactgaagcttgcg 229  Q
    |||||||||||||||| |  |||||||||    
T  24771025 gacgcggaaacgtggagcgaaagcttgcg 24770997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 309 - 490
Target Start/End: Complemental strand, 1413387 - 1413201
Alignment:
Q  309 ctgagcaccaaaaaatatatttctttatagcccaagcccg-gcccggtcggacggcg--gtgcgctcgtgtcttatatataatttttggcaagctctcac 405  Q
    |||||||||||||||| |||||||||  |||||||||||  ||| ||||||||||||  ||   | || ||||||||||||||||||||||||| |||||    
T  1413387 ctgagcaccaaaaaatgtatttctttgaagcccaagcccaagcctggtcggacggcgtcgtcgtcgcgcgtcttatatataatttttggcaagcgctcac 1413288  T
Q  406 tccgttcacaaaagtgtgtaccccaa--gcacacacccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    |||||||||||||||| |||||||||  || ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1413287 tccgttcacaaaagtgggtaccccaagggcgcaagcccttggaagtgatatcccacatatataaacactactagagtgtgtgatcta 1413201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 24770842 - 24770733
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||    
T  24770842 tatataatttttggctagcgctcactccgttaacaaaagtgggtaccccaagggcacacccttggaagtgatatcccacatatataaacactactagagt 24770743  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  24770742 gtgtgatcta 24770733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 24776296 - 24776187
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| | | ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||    
T  24776296 tatataatttttggctaacgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatatcccacatatataaacactactagagt 24776197  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  24776196 gtgtgatcta 24776187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 381 - 490
Target Start/End: Original strand, 36254427 - 36254536
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||    
T  36254427 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaagggcacacccttggaagtgatttcccacatatataaacactactagagt 36254526  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  36254527 gtgtgatcta 36254536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 1413512 - 1413444
Alignment:
Q  146 cgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccacgacgcggaaacgtg 214  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  1413512 cgacccggttcgcgacccgccaaacttagcccacgacccagtaacggtaacccacgacgcggaaacgtg 1413444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 17505191 - 17505308
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | |    
T  17505191 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactatt 17505289  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  17505290 cccgagctctcaatttata 17505308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 17510296 - 17510413
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | |    
T  17510296 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactatt 17510394  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  17510395 cccgagctctcaatttata 17510413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 41858831 - 41858941
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcccg 103  Q
    |||||||||||||||||||||||||| || ||| ||||||   ||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||||    
T  41858831 aaagaacggttcgtcaacacaaaccgcggaaga-gagaag---agaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccg 41858926  T
Q  104 agctctctatttata 118  Q
    ||||||| |||||||    
T  41858927 agctctcaatttata 41858941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 42019811 - 42019928
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    |||||| |||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | |    
T  42019811 aaagaatggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactatt 42019909  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  42019910 cccgagctctcaatttata 42019928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 42024591 - 42024708
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    |||||||| |||||||||||||||||    ||||||| |||| || |||||||||||||||||  |||||||||||  |||||||||||||||| | | |    
T  42024591 aaagaacgattcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcaattttggagtgaagaatactatt 42024689  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  42024690 cccgagctctcaatttata 42024708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 1413557 - 1413508
Alignment:
Q  134 cgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacc 183  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1413557 cgtttactccgccgacccggttcgcgacccgccaaacttagcccacgacc 1413508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 43579898 - 43580015
Alignment:
Q  4 aaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaat 99  Q
    ||||||||||||||||||||||||||    ||||||| |||| || ||||||| |||||||||  ||||||||||| ||||||| ||||| ||| | | |    
T  43579898 aaagaacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaatcagagaagagtattcgattctcagttttggtgtgaaaaatactatt 43579996  T
Q  100 cccgagctctctatttata 118  Q
    ||||||||||| |||||||    
T  43579997 cccgagctctcaatttata 43580015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 411
Target Start/End: Complemental strand, 1413653 - 1413554
Alignment:
Q  309 ctgagcaccaaaaaatatatttctttatagcccaagcccggcccggtcggacggcg--gtgcgctcgtgtcttatatataatttttggcaagctctcact 406  Q
    ||||||||||||||||||||||||||  |||||||||| ||     ||||||||||  ||   | || ||||||||||||||||||||||||| ||||||    
T  1413653 ctgagcaccaaaaaatatatttctttgaagcccaagcctgg-----tcggacggcgtcgtcgtcgcgcgtcttatatataatttttggcaagcgctcact 1413559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 490
Target Start/End: Original strand, 26709656 - 26709707
Alignment:
Q  439 cccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    ||||||||||||||||| | |||||||||||||||||| | ||||| |||||    
T  26709656 cccttggaagtgatatctcacatatataaacactactacaatgtgtaatcta 26709707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 490
Target Start/End: Original strand, 26979390 - 26979441
Alignment:
Q  439 cccttggaagtgatatcccgcatatataaacactactagagtgtgtgatcta 490  Q
    ||||||||||||||||| | |||||||||||||||||| | ||||| |||||    
T  26979390 cccttggaagtgatatctcacatatataaacactactacaatgtgtaatcta 26979441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 7e-84; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 24884937 - 24885118
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||    
T  24884937 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaattccattc 24885036  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgac 182  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24885037 ccgagctctctatttatagagaggatttgacctcgttttctccgccgacccggttcgcgacccaccaaacttagcccacgac 24885118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 21643137 - 21642934
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | | ||    
T  21643137 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattc 21643038  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  21643037 ccgaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacccgcgaaacttagcccacgacccagtaacggtaa-ccac 21642939  T
Q  201 gacgc 205  Q
    |||||    
T  21642938 gacgc 21642934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 21642762 - 21642559
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| | | ||    
T  21642762 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattc 21642663  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  21642662 ccgaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacccgcgaaacttagcccacgacccagtaacggtaa-ccac 21642564  T
Q  201 gacgc 205  Q
    |||||    
T  21642563 gacgc 21642559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 21643512 - 21643309
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | | ||    
T  21643512 agaaaagaacggttcgtcaacacaaatcgagggagatgagaaggggagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattc 21643413  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  21643412 ccgaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacccgcgaaacttagcccacgacccagtaacggtaa-ccac 21643314  T
Q  201 gacgc 205  Q
    |||||    
T  21643313 gacgc 21643309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 21641637 - 21641434
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| | | ||    
T  21641637 agaaaagaacggttcgtcaacataaaccgagggagatgagaaggggagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattc 21641538  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  21641537 ccgaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacccgcgaaacttagcccacgacccagtaacggtaa-ccac 21641439  T
Q  201 gacgc 205  Q
    |||||    
T  21641438 gacgc 21641434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 21642012 - 21641809
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| | | ||    
T  21642012 agaaaagaacggttcgtcaacataaaccgagggagatgagaaggggagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattc 21641913  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  21641912 ccgaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacccgcgaaacttagcccacgacccagtaacggtaa-ccac 21641814  T
Q  201 gacgc 205  Q
    |||||    
T  21641813 gacgc 21641809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 21642387 - 21642184
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| | | ||    
T  21642387 agaaaagaacggttcgtcaacataaaccgagggagatgagaaggggagaaaaccaaagaagaggattcgattctcgattttggagtgaagaatcccattc 21642288  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccac 200  Q
    ||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  21642287 ccgaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacccgcgaaacttagcccacgacccagtaacggtaa-ccac 21642189  T
Q  201 gacgc 205  Q
    |||||    
T  21642188 gacgc 21642184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 3 - 205
Target Start/End: Complemental strand, 21643950 - 21643749
Alignment:
Q  3 aaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatccc 102  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||||    
T  21643950 aaaagaacggttcatcaacacaaaccgagggagatgggaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattccc 21643851  T
Q  103 gagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaacggtaatccacga 202  Q
    ||| ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||    
T  21643850 gaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacctgcgaaacttagcccacgacctagtaactgtaa-ccacga 21643752  T
Q  203 cgc 205  Q
    |||    
T  21643751 cgc 21643749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 90 - 263
Target Start/End: Complemental strand, 17955615 - 17955442
Alignment:
Q  90 gaatgcaaatcccgagctctctatttatagagtggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacctagtaa 189  Q
    |||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||| |||| |||||    
T  17955615 gaatacaaatcctgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgactcgcgaacgttagcccatgacccagtaa 17955516  T
Q  190 cggtaatccacgacgcggaaacgtggaactgaagcttgcgcgcgtggaaaacgtgtgagacttggtctccgcgt 263  Q
    |||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  17955515 cggtaacccacgacgcggaaatgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgcgt 17955442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 43999101 - 43998955
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |||| ||||||| |||||    
T  43999101 agaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaatcagagaagaggattcgattctcagttttagagtaaagaatgtaaatc 43999002  T
Q  101 ccgagctctctatttatagagtggatttgacctcgttttctccgccg 147  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  43999001 ccgagctctctatttatagaggggatttcacctcgttttctccgccg 43998955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 381 - 497
Target Start/End: Complemental strand, 42514085 - 42513969
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  42514085 tatataatttttggctagcgctcactccgttcacaaaagtgggtaccccaaggacacacccttggaagtgatatcccacatatataaacactactagagt 42513986  T
Q  481 gtgtgatctatctaatg 497  Q
    |||||||||||| ||||    
T  42513985 gtgtgatctatccaatg 42513969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 375 - 490
Target Start/End: Complemental strand, 43998788 - 43998674
Alignment:
Q  375 gtcttatatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactac 474  Q
    ||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  43998788 gtcttatatataatttttggcaagcgctcactttgttcacaaaagtgtgtaccccaagcacaca-ccttggaagtgatatcccacatatataaacactac 43998690  T
Q  475 tagagtgtgtgatcta 490  Q
    ||||||||||||||||    
T  43998689 tagagtgtgtgatcta 43998674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 386 - 490
Target Start/End: Complemental strand, 17955366 - 17955262
Alignment:
Q  386 aatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagtgtgtg 485  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||  ||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  17955366 aatttttggcaagcgctcactctgttcacaaaagtgtgtaccccaagggcacacccgtggaagtgatatcccacatatataaacactactagagtgtgtg 17955267  T
Q  486 atcta 490  Q
    |||||    
T  17955266 atcta 17955262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 383 - 490
Target Start/End: Complemental strand, 21641361 - 21641254
Alignment:
Q  383 tataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagtgt 482  Q
    ||||||||||||| ||| |||||||||||||||||||||  |||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21641361 tataatttttggctagcgctcactccgttcacaaaagtggataccccaagggcacacccttggaagtgatatcccacatatataaacactactagagtgt 21641262  T
Q  483 gtgatcta 490  Q
    ||||||||    
T  21641261 gtgatcta 21641254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 32010818 - 32010934
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  32010818 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 32010917  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  32010918 cgagctctcaatttata 32010934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 32015992 - 32016108
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  32015992 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 32016091  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  32016092 cgagctctcaatttata 32016108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 381 - 490
Target Start/End: Original strand, 24885236 - 24885343
Alignment:
Q  381 tatataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaagcacacacccttggaagtgatatcccgcatatataaacactactagagt 480  Q
    ||||||||||||||| |||||  |||||||||||||||||| ||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||    
T  24885236 tatataatttttggctagctc--actccgttcacaaaagtgggtaccccaagggtacacccttggaagtgatatcccacatatataaacactactagagt 24885333  T
Q  481 gtgtgatcta 490  Q
    ||||||||||    
T  24885334 gtgtgatcta 24885343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 42514245 - 42514180
Alignment:
Q  47 agaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcccgagctctcta 112  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||   | ||||||||||||||    
T  42514245 agaaaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctcta 42514180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 17955419 - 17955367
Alignment:
Q  309 ctgagcaccaaaaaatatatttctttatagcccaagcccggcccggtcggacg 361  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  17955419 ctgagcaccaaaaaatatatttctttaaagcccaagcccggctcggtcggacg 17955367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17955660 - 17955614
Alignment:
Q  1 agaaaagaacggttcgtcaacacaaaccgagggagatgagaagggga 47  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  17955660 agaaaagaacgattcgtcaacacaaaccgagggagatgagaagggga 17955614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 43998929 - 43998883
Alignment:
Q  233 gtggaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 279  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  43998929 gtggaaaacgtgtgagacttggtctccgtgtgcgggaatctcggagc 43998883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 21641736 - 21641687
Alignment:
Q  383 tataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaag 432  Q
    ||||||||||||| ||| |||||||||||||||||||||  |||||||||    
T  21641736 tataatttttggctagcgctcactccgttcacaaaagtggataccccaag 21641687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 21642111 - 21642062
Alignment:
Q  383 tataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaag 432  Q
    ||||||||||||| ||| |||||||||||||||||||||  |||||||||    
T  21642111 tataatttttggctagcgctcactccgttcacaaaagtggataccccaag 21642062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 21642486 - 21642437
Alignment:
Q  383 tataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaag 432  Q
    ||||||||||||| ||| |||||||||||||||||||||  |||||||||    
T  21642486 tataatttttggctagcgctcactccgttcacaaaagtggataccccaag 21642437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 21642861 - 21642812
Alignment:
Q  383 tataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaag 432  Q
    ||||||||||||| ||| |||||||||||||||||||||  |||||||||    
T  21642861 tataatttttggctagcgctcactccgttcacaaaagtggataccccaag 21642812  T

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Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 21643236 - 21643187
Alignment:
Q  383 tataatttttggcaagctctcactccgttcacaaaagtgtgtaccccaag 432  Q
    ||||||||||||| ||| |||||||||||||||||||||  |||||||||    
T  21643236 tataatttttggctagcgctcactccgttcacaaaagtggataccccaag 21643187  T

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Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 2165625 - 2165553
Alignment:
Q  46 gagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 118  Q
    |||||||| ||||||||  ||| |||||||  |||||||||||||||| | | |||||||||||| |||||||    
T  2165625 gagaaaactagagaagagcatttgattctcaattttggagtgaagaatactattcccgagctctcaatttata 2165553  T

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Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 42514179 - 42514127
Alignment:
Q  228 cgcgcgtggaaaacgtgtgagacttggtc-tccgcgtgcgggaatctcggagc 279  Q
    |||| ||| |||| ||||||||||||||| ||||||||||| |||||||||||    
T  42514179 cgcgtgtgaaaaatgtgtgagacttggtcctccgcgtgcggaaatctcggagc 42514127  T

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Target: scaffold0055 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 3316 - 3432
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  3316 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 3415  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  3416 cgagctctcaatttata 3432  T

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Target: scaffold0052 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 81219 - 81103
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||    
T  81219 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcc 81120  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  81119 cgagctctcaatttata 81103  T

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Target: scaffold0014 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 26665 - 26781
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||| ||||  ||||||||||| ||||||| ||||||||| | | |||    
T  26665 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattcc 26764  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  26765 cgagctctcaatttata 26781  T

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Target: scaffold0014; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 31837 - 31953
Alignment:
Q  2 gaaaagaacggttcgtcaacacaaaccgagggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcc 101  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||| ||||  ||||||||||| ||||||| ||||||||| | | |||    
T  31837 gaaaagaacgattcgtcaacacaaatcgcgggagatgagaaggggagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattcc 31936  T
Q  102 cgagctctctatttata 118  Q
    ||||||||| |||||||    
T  31937 cgagctctcaatttata 31953  T

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Target: scaffold0517 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 3805 - 3918
Alignment:
Q  8 aacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatgcaaatcccg 103  Q
    ||||||||||||||||||||||    ||||||| |||| || |||||||||||||||||  ||||||||||| ||||||||||||||||| | | |||||    
T  3805 aacggttcgtcaacacaaaccgcgggagggagaagaga-ggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccg 3903  T
Q  104 agctctctatttata 118  Q
    ||||||| |||||||    
T  3904 agctctcaatttata 3918  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 2237 - 2277
Alignment:
Q  406 tccgttcacaaaagtgtgtaccccaagcacacacccttgga 446  Q
    |||||||||||||||| ||||||||||  ||||||||||||    
T  2237 tccgttcacaaaagtgggtaccccaagggcacacccttgga 2277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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