View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11762_low_8 (Length: 346)

Name: NF11762_low_8
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11762_low_8
NF11762_low_8
[»] chr5 (3 HSPs)
chr5 (17-346)||(28532493-28532816)
chr5 (95-150)||(29021558-29021613)
chr5 (98-151)||(28673512-28673565)
[»] chr6 (2 HSPs)
chr6 (21-206)||(6588466-6588648)
chr6 (93-204)||(6416827-6416938)
[»] chr3 (5 HSPs)
chr3 (93-204)||(13469859-13469970)
chr3 (93-215)||(51763574-51763696)
chr3 (21-54)||(514011-514044)
chr3 (98-143)||(513925-513970)
chr3 (283-315)||(51763498-51763530)
[»] chr1 (2 HSPs)
chr1 (104-215)||(19467621-19467732)
chr1 (21-54)||(19467779-19467812)
[»] chr4 (7 HSPs)
chr4 (104-204)||(21833493-21833593)
chr4 (103-192)||(532589-532681)
chr4 (21-53)||(1601193-1601225)
chr4 (21-55)||(21833639-21833673)
chr4 (93-191)||(53761012-53761110)
chr4 (284-321)||(7225253-7225290)
chr4 (21-54)||(53761152-53761185)
[»] chr7 (3 HSPs)
chr7 (104-198)||(10615459-10615553)
chr7 (283-327)||(10169137-10169181)
chr7 (283-327)||(10176662-10176706)
[»] chr8 (2 HSPs)
chr8 (98-151)||(18314876-18314929)
chr8 (284-312)||(18314740-18314768)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 28532493 - 28532816
Alignment:
Q  17 gacatcaatgttggtctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagt 116  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532493 gacatcaatgtcggtctctcacggagagcagaagcaatgcctgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagt 28532592  T
Q  117 tgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcctctatcccatt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  28532593 tgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgtgaagtgaaagtgagagagcctctaccccatt 28532692  T
Q  217 gttataactacgagtccgagtctctatcatagagatataatttaaggggtatttaagtatgaggtcgaggtcgagttcttcgagcaaagggaaacattct 316  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||      |||||||||||||||||||||    
T  28532693 gttataactacgagttcgagtctctatcatagagatataatttaaggggtattttagtctgaggtcgaggtcg------tcgagcaaagggaaacattct 28532786  T
Q  317 gcgatatgaaataggttaacaaagccggaa 346  Q
    |||||| |||||||||||||||||||||||    
T  28532787 gcgataagaaataggttaacaaagccggaa 28532816  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 29021558 - 29021613
Alignment:
Q  95 acttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgat 150  Q
    ||||||| |||||||||||||||| | |  ||||||||||||||||||| ||||||    
T  29021558 acttcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgat 29021613  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 28673565 - 28673512
Alignment:
Q  98 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 151  Q
    |||| |||||||||||||||| | | ||| |||||||||||||||| |||||||    
T  28673565 tcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatg 28673512  T

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Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 6588648 - 6588466
Alignment:
Q  21 tcaatgttggtctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgct 120  Q
    ||||| ||||||||||||||||||||||||||||| |||||| |||||||    |   | |||||   ||||||||||| |||||||||||||| ||| |    
T  6588648 tcaattttggtctctcacggagagcagaagcaatgcctgcattggttaattcacg---acaaccaaatatgttgacttcctggagaagcttacaattgtt 6588552  T
Q  121 gaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcct 206  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||  |||||||||||||    
T  6588551 gaacaagtggaaaagcgattgattgttgatgggaaagtaagaaagattaaccttgcgaagtttgaaaagtgcgagtgagagagcct 6588466  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 6416827 - 6416938
Alignment:
Q  93 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 192  Q
    ||||||||| ||||||||||||||||  ||| || |||||||| ||||||||||| |  |||||   |||||||||||| ||||||||||| | |||||     
T  6416827 tgacttcttcgagaagcttacagttgtggaataactggaaaagggattggttgtttacaggaaatctagaaagattaactttgcggagtttaaaaagtgc 6416926  T
Q  193 aagtgagagagc 204  Q
    |||||| |||||    
T  6416927 aagtgatagagc 6416938  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 13469970 - 13469859
Alignment:
Q  93 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 192  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||| ||||||| || |||||   |||||||||||||||||||||||| | |||||     
T  13469970 tgacttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtttataggaaaactagaaagattaaccttgcggagtttaaaaagtgc 13469871  T
Q  193 aagtgagagagc 204  Q
    |||||| |||||    
T  13469870 aagtgatagagc 13469859  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 51763696 - 51763574
Alignment:
Q  93 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 192  Q
    |||| ||||||||||||||||||||||  |  | ||||||||| ||||| ||||| |||||| ||  ||||| ||||||||| || ||||||| ||| |     
T  51763696 tgacatcttggagaagcttacagttgcatagaaggtggaaaagcgattgattgtttatgggacagccagaaaaattaaccttacgcagtttgaaaagagc 51763597  T
Q  193 aagtgagagagcctctatcccat 215  Q
    |||||| || || | ||||||||    
T  51763596 aagtgaaagtgcttgtatcccat 51763574  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 514044 - 514011
Alignment:
Q  21 tcaatgttggtctctcacggagagcagaagcaat 54  Q
    ||||||||||||||||||||||||||||||||||    
T  514044 tcaatgttggtctctcacggagagcagaagcaat 514011  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 513970 - 513925
Alignment:
Q  98 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggt 143  Q
    ||||| ||||||||||||||  |||||||||||||||| |||||||    
T  513970 tcttgaagaagcttacagtttttgaacaagtggaaaagcgattggt 513925  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 51763530 - 51763498
Alignment:
Q  283 gaggtcgagttcttcgagcaaagggaaacattc 315  Q
    ||||||||||||||||||||| |||||||||||    
T  51763530 gaggtcgagttcttcgagcaatgggaaacattc 51763498  T

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Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 19467732 - 19467621
Alignment:
Q  104 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 203  Q
    ||||||||||| ||| | |||||||| ||||  |||| || | | |||||||||  |||||||||||||||||||||||||||||||| |||||| ||||    
T  19467732 agaagcttacaattgttaaacaagtgaaaaatcgatttgtcgctcatgggaaagccagaaagattaaccttgcggagtttgagaagtgcaagtgaaagag 19467633  T
Q  204 cctctatcccat 215  Q
    |||||| |||||    
T  19467632 cctctaccccat 19467621  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 19467812 - 19467779
Alignment:
Q  21 tcaatgttggtctctcacggagagcagaagcaat 54  Q
    ||||||||||||||||||||| ||||||||||||    
T  19467812 tcaatgttggtctctcacggatagcagaagcaat 19467779  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 21833593 - 21833493
Alignment:
Q  104 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 203  Q
    ||||||||||| ||  | | |||||||||||| ||||| ||||| |||||||||  |||||||||||||||||||||||||| ||||| |||||| ||||    
T  21833593 agaagcttacaattctttagcaagtggaaaagagattgattgtttatgggaaagccagaaagattaaccttgcggagtttgataagtgcaagtgaaagag 21833494  T
Q  204 c 204  Q
    |    
T  21833493 c 21833493  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 532589 - 532681
Alignment:
Q  103 gagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg--ggaaag-gaagaaagattaaccttgcggagtttgagaagtga 192  Q
    |||||||||||| ||  |||||||||||||||| ||||||| |||||||  |  | | | |||||||||||||||||||||||||| ||||||    
T  532589 gagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtga 532681  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 1601193 - 1601225
Alignment:
Q  21 tcaatgttggtctctcacggagagcagaagcaa 53  Q
    |||||||||||||||||||||||||||||||||    
T  1601193 tcaatgttggtctctcacggagagcagaagcaa 1601225  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 21833673 - 21833639
Alignment:
Q  21 tcaatgttggtctctcacggagagcagaagcaatg 55  Q
    ||||||||||||||||||||||||| |||||||||    
T  21833673 tcaatgttggtctctcacggagagctgaagcaatg 21833639  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 53761110 - 53761012
Alignment:
Q  93 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtg 191  Q
    |||| ||||| ||||| ||||| ||  | |||||||||||||||||||| | | | ||||  |||  ||||||||||||||| |||||||||| |||||    
T  53761110 tgacctcttgaagaagattacaattcttcaacaagtggaaaagtgattgttcgattatggttaagccagaaagattaaccttacggagtttgaaaagtg 53761012  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 7225290 - 7225253
Alignment:
Q  284 aggtcgagttcttcgagcaaagggaaacattctgcgat 321  Q
    ||||||||||||||||||||||||||||| || |||||    
T  7225290 aggtcgagttcttcgagcaaagggaaacaatccgcgat 7225253  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 53761185 - 53761152
Alignment:
Q  21 tcaatgttggtctctcacggagagcagaagcaat 54  Q
    ||||||||||||| ||||||||||||||||||||    
T  53761185 tcaatgttggtctttcacggagagcagaagcaat 53761152  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 10615459 - 10615553
Alignment:
Q  104 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtga 198  Q
    |||||||||||||||  || |||||||| ||| ||||| ||||| ||| ||||   |||||||||||||||||||||||| | ||||||||||||    
T  10615459 agaagcttacagttgtcgagcaagtggagaagggattgattgtttatgagaaaactagaaagattaaccttgcggagtttaaaaagtgaaagtga 10615553  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 10169181 - 10169137
Alignment:
Q  283 gaggtcgagttcttcgagcaaagggaaacattctgcgatatgaaa 327  Q
    ||||| ||||||||| |||||||| ||||||||||||||| ||||    
T  10169181 gaggttgagttcttcaagcaaaggaaaacattctgcgataagaaa 10169137  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 10176706 - 10176662
Alignment:
Q  283 gaggtcgagttcttcgagcaaagggaaacattctgcgatatgaaa 327  Q
    ||||| ||||||||| |||||||| ||||||||||||||| ||||    
T  10176706 gaggttgagttcttcaagcaaaggaaaacattctgcgataagaaa 10176662  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 18314929 - 18314876
Alignment:
Q  98 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 151  Q
    |||| |||||||||||||||  |||||||||||||||| ||||| | |||||||    
T  18314929 tcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatg 18314876  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 312
Target Start/End: Complemental strand, 18314768 - 18314740
Alignment:
Q  284 aggtcgagttcttcgagcaaagggaaaca 312  Q
    |||||||||||||||||||||||||||||    
T  18314768 aggtcgagttcttcgagcaaagggaaaca 18314740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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