View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11762_low_9 (Length: 338)

Name: NF11762_low_9
Description: NF11762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11762_low_9
NF11762_low_9
[»] chr5 (3 HSPs)
chr5 (70-330)||(28532769-28533029)
chr5 (22-72)||(28533069-28533119)
chr5 (239-284)||(41900503-41900548)
[»] chr4 (2 HSPs)
chr4 (227-286)||(553759-553818)
chr4 (231-286)||(21833278-21833333)
[»] chr6 (10 HSPs)
chr6 (228-286)||(6593929-6593987)
chr6 (101-198)||(6588144-6588241)
chr6 (228-284)||(6423907-6423963)
chr6 (229-282)||(6410699-6410752)
chr6 (228-282)||(19633104-19633158)
chr6 (229-286)||(6417092-6417149)
chr6 (236-285)||(6596241-6596290)
chr6 (227-268)||(7132323-7132364)
chr6 (227-268)||(7135246-7135287)
chr6 (227-268)||(7138169-7138210)
[»] chr3 (2 HSPs)
chr3 (228-286)||(51763388-51763446)
chr3 (228-285)||(51113195-51113252)
[»] chr7 (3 HSPs)
chr7 (227-286)||(10615713-10615772)
chr7 (227-287)||(10169047-10169107)
chr7 (227-287)||(10176572-10176632)
[»] chr8 (2 HSPs)
chr8 (241-285)||(32151969-32152013)
chr8 (229-277)||(34935986-34936034)
[»] chr1 (2 HSPs)
chr1 (222-286)||(7555198-7555262)
chr1 (227-284)||(19467428-19467485)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 70 - 330
Target Start/End: Complemental strand, 28533029 - 28532769
Alignment:
Q  70 cctacgtagcctcttcaaaaggttcacccatctcaattccctcaatctctctcgctatctcggtcacaacctcgacgaccttctctgccaaatctctcgt 169  Q
    ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||   |    
T  28533029 cctacttagcctcttcaaaaggttcacccatctcaatttcctcgatctctctcgctatctaggtaacaacctcgacgaccttctctgccaaatctcagat 28532930  T
Q  170 ttctcgtcgttcaaattcacttcactcaaactcccaaacgttggtaaccgcttcccagcaaatggattgcgagctttttcacaaaacattacaactttga 269  Q
    ||| |||| |||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532929 ttcccgtcattcaaaatcatttcactcaaacttccaaacgttggtaaccgcttcccagcaaatggattgcgagctttttcacaaaacattacaactttga 28532830  T
Q  270 cctctttcacttgttccggctttgttaacctatttcttatcgcagaatgtttccctttgct 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532829 cctctttcacttgttccggctttgttaacctatttcttatcgcagaatgtttccctttgct 28532769  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 28533119 - 28533069
Alignment:
Q  22 gagttctctctccaccgtatccaaacggttcctctccatcaccggccgcct 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28533119 gagttctctctccaccgtatccaaacggttcctctccatcaccggacgcct 28533069  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 41900503 - 41900548
Alignment:
Q  239 cgagctttttcacaaaacattacaactttgacctctttcacttgtt 284  Q
    |||||||||||  |||| |||||||||||||||||| |||||||||    
T  41900503 cgagctttttccaaaaagattacaactttgacctctctcacttgtt 41900548  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 553818 - 553759
Alignment:
Q  227 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 286  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||| |||| ||||||    
T  553818 gcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctcacctgttcc 553759  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 21833278 - 21833333
Alignment:
Q  231 atggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 286  Q
    |||| ||||||| |||| ||||||||||||| |||||||||||| |||||||||||    
T  21833278 atgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttcc 21833333  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 6593929 - 6593987
Alignment:
Q  228 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 286  Q
    ||||||| ||||||| ||| |||||||| |||||||||||||||||||||| |||||||    
T  6593929 caaatggtttgcgagttttctcacaaaagattacaactttgacctctttcaattgttcc 6593987  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 6588144 - 6588241
Alignment:
Q  101 ctcaattccctcaatctctctcgctatctcggtcacaacctcgacgaccttctctgccaaatctctcgtttctcgtcgttcaaattcacttcactcaa 198  Q
    |||| ||||||||||||||| || |||  |||| |  |||||||||||||||| |||||||||||||||||| |  | || ||| |||||||||||||    
T  6588144 ctcacttccctcaatctctcgcgatatagcggttatgacctcgacgaccttctttgccaaatctctcgtttcccaacattgaaaatcacttcactcaa 6588241  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 6423963 - 6423907
Alignment:
Q  228 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgtt 284  Q
    ||||||| ||||||||||| || |||||||| ||||||||||||||| |||||||||    
T  6423963 caaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 6410752 - 6410699
Alignment:
Q  229 aaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttg 282  Q
    |||||| |||| || ||| || ||||||||||||||||||||||||||||||||    
T  6410752 aaatgggttgcaagttttctcccaaaacattacaactttgacctctttcacttg 6410699  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 19633158 - 19633104
Alignment:
Q  228 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttg 282  Q
    ||||||| ||||||||||| ||  ||| ||||||||||||||||||| |||||||    
T  19633158 caaatgggttgcgagctttctccgaaagcattacaactttgacctctctcacttg 19633104  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 6417149 - 6417092
Alignment:
Q  229 aaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 286  Q
    |||||| || |||||||| || ||||| | |||||||||||||||| |||||||||||    
T  6417149 aaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 6596241 - 6596290
Alignment:
Q  236 ttgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 285  Q
    ||||||| ||| || |||||||| ||||||||||||||| ||||||||||    
T  6596241 ttgcgagttttctcccaaaacataacaactttgacctctctcacttgttc 6596290  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 7132364 - 7132323
Alignment:
Q  227 gcaaatggattgcgagctttttcacaaaacattacaactttg 268  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7132364 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 7135287 - 7135246
Alignment:
Q  227 gcaaatggattgcgagctttttcacaaaacattacaactttg 268  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7135287 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 7138210 - 7138169
Alignment:
Q  227 gcaaatggattgcgagctttttcacaaaacattacaactttg 268  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7138210 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 51763388 - 51763446
Alignment:
Q  228 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 286  Q
    ||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||||||||    
T  51763388 caaatgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgttcc 51763446  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 51113195 - 51113252
Alignment:
Q  228 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 285  Q
    ||||||||||||||||||| ||  |||| ||||||||| |||||||| ||||||||||    
T  51113195 caaatggattgcgagctttctcggaaaatattacaactctgacctctctcacttgttc 51113252  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 10615772 - 10615713
Alignment:
Q  227 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 286  Q
    |||||||| || |||||||| || ||||| |||||||||||||||||| |||||||||||    
T  10615772 gcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcc 10615713  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 10169047 - 10169107
Alignment:
Q  227 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccg 287  Q
    |||||||| ||||||| ||| || ||||| |||| ||||||||||||| ||||||||||||    
T  10169047 gcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccg 10169107  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 10176572 - 10176632
Alignment:
Q  227 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccg 287  Q
    |||||||| ||||||| ||| || ||||| |||| ||||||||||||| ||||||||||||    
T  10176572 gcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccg 10176632  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 32152013 - 32151969
Alignment:
Q  241 agctttttcacaaaacattacaactttgacctctttcacttgttc 285  Q
    |||||| || |||||||||||||||||||||||| ||||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttc 32151969  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 34935986 - 34936034
Alignment:
Q  229 aaatggattgcgagctttttcacaaaacattacaactttgacctctttc 277  Q
    |||||| ||||||| ||| |||||||| |||||||||||||| ||||||    
T  34935986 aaatggtttgcgagttttctcacaaaatattacaactttgacatctttc 34936034  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 7555262 - 7555198
Alignment:
Q  222 tcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 286  Q
    |||| |||| ||||||||||||||| || ||||| ||||||||||| |||||  |||||||||||    
T  7555262 tccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 7555198  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 19467428 - 19467485
Alignment:
Q  227 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgtt 284  Q
    |||||||| ||||||| |||  | ||||| |||||||||||||||||| |||||||||    
T  19467428 gcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtt 19467485  T

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