View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11763_high_5 (Length: 229)

Name: NF11763_high_5
Description: NF11763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11763_high_5
NF11763_high_5
[»] chr5 (1 HSPs)
chr5 (1-229)||(28532170-28532396)
[»] chr4 (6 HSPs)
chr4 (101-207)||(21833823-21833929)
chr4 (1-52)||(21833970-21834021)
chr4 (96-191)||(3438105-3438200)
chr4 (121-202)||(547490-547571)
chr4 (152-213)||(53761296-53761357)
chr4 (94-191)||(55908183-55908280)
[»] chr3 (2 HSPs)
chr3 (96-210)||(51763882-51763996)
chr3 (1-52)||(13470321-13470372)
[»] chr6 (2 HSPs)
chr6 (2-216)||(6588759-6588968)
chr6 (2-48)||(8913659-8913705)
[»] chr1 (1 HSPs)
chr1 (101-216)||(19467935-19468050)
[»] chr7 (3 HSPs)
chr7 (1-52)||(10615052-10615103)
chr7 (95-215)||(10169567-10169687)
chr7 (95-215)||(10177092-10177212)


Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 28532170 - 28532396
Alignment:
Q  1 tcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaatttactaagtccaatataatatacaaatgtcggaaaccttgacg---a 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     |||||||||||||||||||||   |    
T  28532170 tcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaacttactaagtccaatata-----caaatgtcggaaaccttgacgtcga 28532264  T
Q  98 caattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgtaga 197  Q
    || ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28532265 cacttggataacaaacaaaagagtccgtcataactatagccccagcgattttttaggacaagctttatcaaaggaagacctccccttgcaatagtgtaga 28532364  T
Q  198 gcaactcatcagaaatattaaaataatacaaa 229  Q
    ||||||||||||||||||||||||||||||||    
T  28532365 gcaactcatcagaaatattaaaataatacaaa 28532396  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 207
Target Start/End: Complemental strand, 21833929 - 21833823
Alignment:
Q  101 ttggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagca 200  Q
    ||||||||||||||||||| ||||||||||||||||||   ||| |||   ||||||||| | || |||||||||||| |||||||||||| |||||| |    
T  21833929 ttggataacaaacaaaagattccatcataactatagccggtgcattttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 21833830  T
Q  201 actcatc 207  Q
    |||||||    
T  21833829 actcatc 21833823  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21834021 - 21833970
Alignment:
Q  1 tcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaa 52  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  21834021 tcaaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaa 21833970  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 3438200 - 3438105
Alignment:
Q  96 gacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatag 191  Q
    |||| |||||||||| | |||||| | || |||||||||||||   |||||| |  ||||||||| || ||||||||||||||||  |||||||||    
T  3438200 gacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaaggaagacctccaattgcaatag 3438105  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 547490 - 547571
Alignment:
Q  121 tccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagcaac 202  Q
    |||| |||||||||||||  | |||||||  |||||||||||| ||||||||| | || || ||||||||| | ||||||||    
T  547490 tccagcataactatagccgaaacaattttggaggacaagctttctcaaaggaatagcttccattgcaatagaggagagcaac 547571  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 53761357 - 53761296
Alignment:
Q  152 aggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagcaactcatcagaaat 213  Q
    ||||||||  ||||||||||||||| | || ||||||||| ||||||||||| ||| |||||    
T  53761357 aggacaagacttgtcaaaggaagacattcctttgcaatagagtagagcaacttatctgaaat 53761296  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 55908280 - 55908183
Alignment:
Q  94 acgacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatag 191  Q
    |||||| |||||||||||| |  | | |||| ||||| |||||||   ||||||||  ||||||||  || ||||||||||||||||| |||||||||    
T  55908280 acgacacttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatag 55908183  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 51763996 - 51763882
Alignment:
Q  96 gacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgta 195  Q
    |||| ||||||| |||||||| || |||| ||||||||||||||  |||| |||  ||||||||| || ||||| |||||||| |||||||||| | |||    
T  51763996 gacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaaggacaagccttttcaaaagaagaccttcccttgcaatcgagta 51763897  T
Q  196 gagcaactcatcaga 210  Q
    |||||||||||||||    
T  51763896 gagcaactcatcaga 51763882  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13470372 - 13470321
Alignment:
Q  1 tcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaa 52  Q
    ||||| ||| ||||||||||||||| |||| |||||||||||||||||||||    
T  13470372 tcaaaccactaagaaacgaagacaattggagaacatgttgatcattcagaaa 13470321  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 6588968 - 6588759
Alignment:
Q  2 caaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaatttactaagtccaatataatatacaaatgtcggaaaccttgacgacaat 101  Q
    ||||||||||||||| |||||||| | || |||||||||||||||||||||  || ||  | ||| ||      ||||||| |||||| || | ||||      
T  6588968 caaatcaccaagaaaggaagacaattcgacaacatgttgatcattcagaaacctattatcttcaagatc-----caaatgttggaaacttttatgacaca 6588874  T
Q  102 tggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagcaa 201  Q
    ||||||||||| |||||||||||| ||||  |  |||  | |||| ||| || |||||  ||||||||||||||| |  |||||||||||||||||||||    
T  6588873 tggataacaaataaaagagtccattataataacggccagaacaatatttgagtacaagtcttgtcaaaggaagacgtttccttgcaatagtgtagagcaa 6588774  T
Q  202 ctcatcagaaatatt 216  Q
    |||||| || |||||    
T  6588773 ctcatcggagatatt 6588759  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 8913705 - 8913659
Alignment:
Q  2 caaatcaccaagaaacgaagacaactggataacatgttgatcattca 48  Q
    ||||| |||||||||| ||||||||| || |||||||||||||||||    
T  8913705 caaattaccaagaaacaaagacaacttgacaacatgttgatcattca 8913659  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 19468050 - 19467935
Alignment:
Q  101 ttggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgtagagca 200  Q
    ||||||||||||||||||| |||| |||| |||| |||  |||||| ||| ||||||||| | |||||||| || ||| ||| |||||||| ||||||||    
T  19468050 ttggataacaaacaaaagattccagcatagctatggccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtagagca 19467951  T
Q  201 actcatcagaaatatt 216  Q
      |||||||| |||||    
T  19467950 tttcatcagagatatt 19467935  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10615052 - 10615103
Alignment:
Q  1 tcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaa 52  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||||||    
T  10615052 tcaaatcaccaagaaatgaagacaattggacaacatgttgatcattcagaaa 10615103  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 10169687 - 10169567
Alignment:
Q  95 cgacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgt 194  Q
    ||||| || ||| |||||||||||| |||| |||| || ||| || |||||| | | ||| ||||| | |||||||| |||||| |||| ||||||| ||    
T  10169687 cgacacttagatgacaaacaaaagattccagcatagctttagtccaagcaatatctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagt 10169588  T
Q  195 agagcaactcatcagaaatat 215  Q
    ||||||  |||||||| ||||    
T  10169587 agagcatttcatcagagatat 10169567  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 10177212 - 10177092
Alignment:
Q  95 cgacaattggataacaaacaaaagagtccatcataactatagccccagcaattttttaggacaagctttgtcaaaggaagacctccccttgcaatagtgt 194  Q
    ||||| || ||| |||||||||||| |||| |||| || ||| || |||||| | | ||| ||||| | |||||||| |||||| |||| ||||||| ||    
T  10177212 cgacacttagatgacaaacaaaagattccagcatagctttagtccaagcaatatctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagt 10177113  T
Q  195 agagcaactcatcagaaatat 215  Q
    ||||||  |||||||| ||||    
T  10177112 agagcatttcatcagagatat 10177092  T

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