View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11763_low_1 (Length: 520)
Name: NF11763_low_1
Description: NF11763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11763_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 39784594 - 39784086
Alignment:
| Q |
1 |
aagatttaagcatagaaattacaatgaattagatgatgttatcatgtcacaaatggaagagttcgcagtgctctactagaagaataaaattaggtccaca |
100 |
Q |
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| T |
39784594 |
aagatttaagcatagaaattacaatgaattagaggatgttatcatgtcacaaatggaagagttcgcagtgctctactagaagaataaaattaggtccaca |
39784495 |
T |
|
| Q |
101 |
tgattaagatttaggagagaaaagagctgctccaaattcttggaccactgagttctagtagtagtgaccaaaagctgataaaatcacttaagcccatatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39784494 |
tgattaagatttaggagagaaaagagctgctccaaattcttggaccactgagttctagtagtagtgaccaaaagctgataaaatcacttaagcccatatg |
39784395 |
T |
|
| Q |
201 |
catgcatcttttatgaaatcgtgcaccttcatatttatcttttggtgtcctcttgaaagaaattattgcattaacatttatcccttgttagttttcattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39784394 |
catgcatcttttatgaaatcgtgcaccttcatatttatcttttggtgtcctcttgaaagaaattattgcattaacatttatcccttgttagttttcattt |
39784295 |
T |
|
| Q |
301 |
tctgtctttacaaaaagtactttcactcttctcaattgaggcaaagttatattttcttctcgactttaaattagggg---caaagaaggccaaccttcct |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39784294 |
tctgtctttacaaaaagtactttcactcttctcaattgaggcaaagttatattttcttctcgactttaaattaggggtgacaaagaaggccaaccttcct |
39784195 |
T |
|
| Q |
398 |
gcattagtccgccctatcatcaatccgtctaaaaatgggcactcggggaggccatcggtggcttgacctgttattaaaagaaaattataaacaaataaaa |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39784194 |
gcattagtccgccctatcatcaatccgtctaaaaatgggcacacggggaggccatcggtggcttgacctgttattaaaagaaaattataaacaaataaaa |
39784095 |
T |
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| Q |
498 |
tttattgat |
506 |
Q |
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| T |
39784094 |
tttattgat |
39784086 |
T |
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