View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11763_low_2 (Length: 382)
Name: NF11763_low_2
Description: NF11763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11763_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 36 - 314
Target Start/End: Original strand, 35755864 - 35756142
Alignment:
| Q |
36 |
cgaaattagtaaaactgaagaatctgcaacaaaattcaaaaacctgcttaattagttttatcttccgaattctatggtttcagttcattgaagtaagnnn |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35755864 |
cgaaattagtaaaactgaagaatctgcaacaaaattcaaaaacctgcttaattagttttatcttccgaattctatggtttcagttcattgaagtaagaaa |
35755963 |
T |
|
| Q |
136 |
nnnnnntctaaacaccacagcataatttcataattaagcataataattaagataatagaacgaacttcataaacaggttcacgaattccgagagaaagag |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35755964 |
aaaaaatctaaacaccacagcataatttcataattaagcataataattaagataatagaacgaacttcataaacaggttcacgaattccgagagaaagag |
35756063 |
T |
|
| Q |
236 |
aatctccagaagaggttgttgcaatcctcggagactctattgaagaagttttgctcggagcttgaccgtttgattcatc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35756064 |
aatctccagaagaggttgttgcaatcctcggagactctattgaagaagttttgctcggagcttgaccgtttgattcatc |
35756142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 35756143 - 35756180
Alignment:
| Q |
330 |
ggaatcagacgcgacggcttccgtttcagcgtcgttcc |
367 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35756143 |
ggaatcagacgcgacagcttccgtttcagcgtcgttcc |
35756180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University