View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11764_low_2 (Length: 570)
Name: NF11764_low_2
Description: NF11764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11764_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 544; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 39586822 - 39586271
Alignment:
| Q |
1 |
atagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgc |
100 |
Q |
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| T |
39586822 |
atagtggaagcgttaagcgctcaaaacttgaatcgttttctgctttcttgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgc |
39586723 |
T |
|
| Q |
101 |
aaaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586722 |
aaaaatggggattgtggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaact |
39586623 |
T |
|
| Q |
201 |
ccctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaac |
300 |
Q |
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| T |
39586622 |
ccctatagttgtagattaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaac |
39586523 |
T |
|
| Q |
301 |
atttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatggaccgacatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586522 |
atttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatggaccgacatt |
39586423 |
T |
|
| Q |
401 |
tgtggtgtcttctgggcaaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtggtgatgcg |
500 |
Q |
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| T |
39586422 |
tgtggtgtcttctgggcaaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtggtgatgcg |
39586323 |
T |
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| Q |
501 |
ggctatgttatgccaatgcctagtcctaaaaggaatggtgattggttgctct |
552 |
Q |
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| T |
39586322 |
ggctacgttatgccaatgcctagtcctaaaaggaatggtgattggttgctct |
39586271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 18 - 552
Target Start/End: Complemental strand, 39543679 - 39543145
Alignment:
| Q |
18 |
cgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattgtgg |
117 |
Q |
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||||||||||| || || |||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||| |||||| |
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| T |
39543679 |
cgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttgtgg |
39543580 |
T |
|
| Q |
118 |
ttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtagatt |
217 |
Q |
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| T |
39543579 |
ttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtagatt |
39543480 |
T |
|
| Q |
218 |
aatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaacatttcttgggactaatt |
317 |
Q |
| |
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| T |
39543479 |
agcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtctaatt |
39543380 |
T |
|
| Q |
318 |
gattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatggaccgacatttgtggtgtcttctgggc |
417 |
Q |
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||||||||||||||||||||||| ||||| |||||||| ||||||||||| || |||||||||| ||| ||||| ||||||||||| ||||| |||| |
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| T |
39543379 |
gattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaaggaccaacatttgtggtatcttcagggc |
39543280 |
T |
|
| Q |
418 |
aaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtggtgatgcgggctatgttatgccaat |
517 |
Q |
| |
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| T |
39543279 |
agaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtgctggctatgttatgccaat |
39543180 |
T |
|
| Q |
518 |
gcctagtcctaaaaggaatggtgattggttgctct |
552 |
Q |
| |
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||| || |||||||||||||||||||||||||||| |
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| T |
39543179 |
gccaagccctaaaaggaatggtgattggttgctct |
39543145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 552
Target Start/End: Complemental strand, 39553701 - 39553164
Alignment:
| Q |
15 |
aagcgctcaaaacttgaatcgttttctgctttcctgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattg |
114 |
Q |
| |
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|||||||||||||| || || |||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||| ||| |
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| T |
39553701 |
aagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttg |
39553602 |
T |
|
| Q |
115 |
tggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtag |
214 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | ||||||| || |||| |
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| T |
39553601 |
tggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatggtggtag |
39553502 |
T |
|
| Q |
215 |
attaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaacatttcttgggacta |
314 |
Q |
| |
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|||| |||||| || ||||| || || ||||||||||| | || | ||||||||||||| |||||| || | || || || ||||||||||| ||| |
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| T |
39553501 |
attagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggcagcagtgacagaggagcatttcttgggtcta |
39553402 |
T |
|
| Q |
315 |
attgattgggtggaagagcatcgaccggttccgggattggcaaggatttattgcggagtaactggtggagcagatggaccgacatttgtggtgtcttctg |
414 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||| ||||||||||| || |||||||||| ||| ||||| |||||||| || ||||| | |
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| T |
39553401 |
attgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaaggaccaacatttgttgtatcttcag |
39553302 |
T |
|
| Q |
415 |
ggcaaaggttttcagagtcgaaggtagatttcggatgggggaagcccgtggttggatcttatcatattccttgtggtggtgatgcgggctatgttatgcc |
514 |
Q |
| |
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|||| |||||| ||||||||||||| ||||| |||||||||||||| ||| |||||||||||||| ||||||| || ||| ||| |||||||||||||| |
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| T |
39553301 |
ggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggaggtagtgctggctatgttatgcc |
39553202 |
T |
|
| Q |
515 |
aatgcctagtcctaaaaggaatggtgattggttgctct |
552 |
Q |
| |
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|||||| || |||||||||||||||||||||||||||| |
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| T |
39553201 |
aatgccaagccctaaaaggaatggtgattggttgctct |
39553164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 17503231 - 17503163
Alignment:
| Q |
297 |
gaacatttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttat |
365 |
Q |
| |
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||||||||| | || || |||||||||||||||| |||||||| ||||| |||||||| | ||||||| |
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| T |
17503231 |
gaacatttcctagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttat |
17503163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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