View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11764_low_3 (Length: 567)
Name: NF11764_low_3
Description: NF11764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11764_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 43 - 549
Target Start/End: Original strand, 14457228 - 14457734
Alignment:
| Q |
43 |
ctggtagtttatccgttataagttcactgatggataataagtttatatcgaattacttatgagttagtttattatccgctatgttttgccaaatagagct |
142 |
Q |
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| T |
14457228 |
ctggtagtttatccgttataagttcacttatggataataagtttatatcgaattacttatgagttagtttattatccgctgtgttttgccaaatagagct |
14457327 |
T |
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| Q |
143 |
ctaagacactctcgctaataaataattagaacattttatttcttttacaattttatgaatcaatttctctaagagaacgcatgattgttaattaaattac |
242 |
Q |
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| T |
14457328 |
ctaagacactctcgctaataaataattagaacattttatttcatttacaattttatgaataaatttctctaagagaacacatgattgttaattaaattac |
14457427 |
T |
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| Q |
243 |
ttaataaaagttcgtaaaatatatctcaactaaaaatgatgcgattgttggaccggatattttctgatgttatccgagtttaaactaaggatcttccttt |
342 |
Q |
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| T |
14457428 |
ttaataaaagttcgtaaaatatatctcaactaaaaatgatgcgattgttggaccggatattttctgatgttatccgagtttaaactaaggatcttccttt |
14457527 |
T |
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| Q |
343 |
gtgtgttttatgaggtgattgataataataactaatnnnnnnntgtttagggctaaaccctaaaccctaacaaatatcaaattatcaataaatgattcta |
442 |
Q |
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| T |
14457528 |
gtgtgttttatgaggtgattgataataataactaataaaaaaatgtttagggctaaaccctaaaccctaacaaatatctaattatcaataaatgattcta |
14457627 |
T |
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| Q |
443 |
ttgttcaaaatcatttttgaggatttaatggatctgaatcctatagaggtcacaccttgcagggtcagtatggatggatttgaattggatatgagtttag |
542 |
Q |
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| T |
14457628 |
ttgttcaaaatcaattttgaggatttaatggatctgaatcctatagaggtcacaccttgcagggtcagtatggatggatttgaattggatatgagtttag |
14457727 |
T |
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| Q |
543 |
aatttat |
549 |
Q |
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| T |
14457728 |
aatttat |
14457734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14456027 - 14456070
Alignment:
| Q |
1 |
tgagggttttaaacacttgggtgattaaaattgttgtgcttact |
44 |
Q |
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| T |
14456027 |
tgagggttttaaaaacttgggtgattaaaattgttgtggttact |
14456070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 49235199 - 49235241
Alignment:
| Q |
5 |
ggttttaaacacttgggtgattaaaattgttgtgcttactggt |
47 |
Q |
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| T |
49235199 |
ggttttaaaaacttgggtgattaaaattgttgtgcttactggt |
49235241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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