View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11764_low_5 (Length: 393)

Name: NF11764_low_5
Description: NF11764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11764_low_5
NF11764_low_5
[»] chr3 (10 HSPs)
chr3 (19-393)||(53430928-53431315)
chr3 (19-220)||(48374446-48374647)
chr3 (96-223)||(53423456-53423583)
chr3 (123-228)||(26095622-26095727)
chr3 (291-390)||(53422969-53423068)
chr3 (293-381)||(26095327-26095415)
chr3 (19-208)||(53308221-53308410)
chr3 (291-393)||(53307768-53307870)
chr3 (290-393)||(48374785-48374888)
chr3 (19-59)||(26095755-26095795)


Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 53431315 - 53430928
Alignment:
Q  19 atattgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgttccaaaaggnnnnnnnccatcaccatataacattgaatc 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  53431315 atatcgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgttccaaaaggaaaaaaaccatcaccatataacattgaatc 53431216  T
Q  119 agggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatcagccatcatg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53431215 agggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatcagccatcatg 53431116  T
Q  219 acctcaggtatatctgtcaactc-------------aatgtatgtatgtaaatgtaatcctatctatcaactcataaattcctattttttctaaattcag 305  Q
    |||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53431115 acctcaggtatatctgtcaactcaatttccctataaaatgtatgtatgtaaatgtaatcctatctatcaactcataaattcctattttttctaaattcag 53431016  T
Q  306 caactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaataac 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53431015 caactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaataac 53430928  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 48374446 - 48374647
Alignment:
Q  19 atattgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgttccaaaaggnnnnnnnccatcaccatataacattgaatc 118  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||   |||||||||||||| ||       || |  || |||||  ||||| |    
T  48374446 atattgcagcaccaggtgttaccattcttgcagcatggattggaaatgacgatgaaaatgttccaaagggaaaaaagcccttgccgtataaacttgaaac 48374545  T
Q  119 agggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatcagccatcatg 218  Q
     || ||||||||| |||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  48374546 cggaacttccatgtcatgcccacatgtttcgggccttgcaggtagcatcaaatctaggaaccctacttggagtgcctctgcaatcagatcagccatcatg 48374645  T
Q  219 ac 220  Q
    ||    
T  48374646 ac 48374647  T

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Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 53423583 - 53423456
Alignment:
Q  96 ccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcct 195  Q
    ||||||||||||||| || ||||||||||||| ||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  53423583 ccatcaccatataactttaaatcagggacttctatgtcatgcccacatgtttcaggccttgcaggcagcattaaatctagaaaccctacttggagtgcct 53423484  T
Q  196 ccgcaattagatcagccatcatgacctc 223  Q
    | ||||| ||||| ||||||||||||||    
T  53423483 ctgcaatcagatcggccatcatgacctc 53423456  T

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Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 26095727 - 26095622
Alignment:
Q  123 acttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatcagccatcatgacct 222  Q
    ||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||    
T  26095727 acttccatgtcatgcccacatgtttcaggccttgcaggtagcatcaaatctaggaaccctacttggagtgcctctgcaatcagatcagccatcatgacct 26095628  T
Q  223 caggta 228  Q
    | ||||    
T  26095627 ccggta 26095622  T

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Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 291 - 390
Target Start/End: Complemental strand, 53423068 - 53422969
Alignment:
Q  291 tttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaat 390  Q
    |||||| |||| ||||||||||| |||||||  ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  53423068 tttttcaaaatgcagcaactcaaattaacaatatgaaggatcccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaat 53422969  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 293 - 381
Target Start/End: Complemental strand, 26095415 - 26095327
Alignment:
Q  293 tttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagc 381  Q
    ||||||||| ||||||||||| |||||||  |||||| ||||||| |||||||||||||||  ||||||||||||||||||||||||||    
T  26095415 tttctaaatgcagcaactcaaattaacaatatgaagggtcccattgcaacagatttagggttaattgccacaccttatgactatggagc 26095327  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 53308410 - 53308221
Alignment:
Q  19 atattgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgttccaaaaggnnnnnnnccatcaccatataacattgaatc 118  Q
    ||||||||||||||||||||  |||||||||| |||||| ||| |||||   |    |||||||||||||       || |||||||||||| || ||||    
T  53308410 atattgcagcaccaggtgttgccattcttgcatcatggattggtaatgatgtaactgatgttccaaaagggaaaaagccctcaccatataactttaaatc 53308311  T
Q  119 agggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatc 208  Q
     |||||||| ||| |||| || |||||||||||| ||||||| || || |||| || |||||||| |||||||||||| ||||| |||||    
T  53308310 ggggacttctatgtcatgccctcatgtttcaggcgttgcaggcagaattaaatttaaaaaccctatttggagtgcctctgcaatcagatc 53308221  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 393
Target Start/End: Complemental strand, 53307870 - 53307768
Alignment:
Q  291 tttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaat 390  Q
    ||||| ||||| ||||| ||||| |||||||  |||||| ||||||||| ||  |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  53307870 tttttataaatgcagcagctcaaattaacaatatgaaggctcccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaat 53307771  T
Q  391 aac 393  Q
    |||    
T  53307770 aac 53307768  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 393
Target Start/End: Original strand, 48374785 - 48374888
Alignment:
Q  290 ttttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaa 389  Q
    ||||||| | || ||||||| ||| |||| ||  |||||| ||||||||| ||||||||||||||  |||||||||||||||||||||||||||| || |    
T  48374785 ttttttcgatatgcagcaacacaaattaataatatgaaggctcccattactacagatttagggtcagttgccacaccttatgactatggagcaggggaca 48374884  T
Q  390 taac 393  Q
    ||||    
T  48374885 taac 48374888  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 26095795 - 26095755
Alignment:
Q  19 atattgcagcaccaggtgttaacattcttgcagcatggact 59  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  26095795 atattgcagcaccaggtgttaacattgttgcagcagggact 26095755  T

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