View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11764_low_6 (Length: 380)
Name: NF11764_low_6
Description: NF11764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11764_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 23 - 372
Target Start/End: Original strand, 30077647 - 30077995
Alignment:
| Q |
23 |
ctagtttgatctctaactaaaataattctcaacaagactatatttatctcgcaatcaaactccaaattatactaatcgaggaaaaagaaaattcacctcc |
122 |
Q |
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| T |
30077647 |
ctagtttgatctctaactaaaataattctcaaca-gactatatttatctcgcaatcaaactccaaattatcctaatcgaggaaaaagaaaattcacctcc |
30077745 |
T |
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| Q |
123 |
tccgtctccgatcagcagcatactgcgaaagcggaacaacctcttgaagcggagtagaaagcggcgtcggaagcggggagtttcgacaaacgggacaaga |
222 |
Q |
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| T |
30077746 |
tccgtctccgatcagcagcatactgcgaaagcggaacaacctcttgaagcggagtagaaagcggcgtcggaagcggggagtttcgacaaacgggacaaga |
30077845 |
T |
|
| Q |
223 |
gccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatccttgtactcacacaaa |
322 |
Q |
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| T |
30077846 |
gccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatccttgtactcacacaaa |
30077945 |
T |
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| Q |
323 |
caaatggaacacgtggtgttctgtcctaaaacagttgcgctgtctctgct |
372 |
Q |
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| T |
30077946 |
caaatggaacacgtggtgttctgtcctaaaacagttgcgctgtctctgct |
30077995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 30084255 - 30084356
Alignment:
| Q |
208 |
acaaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatcc |
307 |
Q |
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| T |
30084255 |
acaaactggacacgaaccattaaccttcaaccatgtatcaacacaatctcgatgaaaatagtggtgacattgcggcatcatcctcaaaatctccgattcc |
30084354 |
T |
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| Q |
308 |
tt |
309 |
Q |
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|| |
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| T |
30084355 |
tt |
30084356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 149 - 337
Target Start/End: Original strand, 10810163 - 10810351
Alignment:
| Q |
149 |
gaaagcggaacaacctcttgaagcggagtagaaagcggcgtcggaagcggggagtttcgacaaacgggacaagagccattaagcttcaaccatgaatcaa |
248 |
Q |
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||||| |||||||| ||||| | ||||||||| | |||||| || | || ||||| ||||||||||||||||| || ||||| |||||||| ||||||| |
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| T |
10810163 |
gaaagtggaacaacttcttgtaacggagtagataacggcgttggcataggtgagttccgacaaacgggacaagaaccgttaagtttcaaccacgaatcaa |
10810262 |
T |
|
| Q |
249 |
gacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatccttgtactcacacaaacaaatggaacacgtg |
337 |
Q |
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| T |
10810263 |
gacaacataggtgaaaatagtgtctacattccggcatcatccttaacatctccgaatccttgtactcacacaaacagatcgaacacgtg |
10810351 |
T |
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