View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11765_low_1 (Length: 582)
Name: NF11765_low_1
Description: NF11765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11765_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 5 - 568
Target Start/End: Original strand, 54075137 - 54075697
Alignment:
| Q |
5 |
ccaaaggtgtgaatcatcgtcaaggctacgacaggccggcgaaggagcttaactgtgttttccaaataggagacggaattcgcaccgccgttacaagctc |
104 |
Q |
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| T |
54075137 |
ccaaaggtgttaatcatcgtcaaggctacgacaggccggcgaaggagcttaactgtgttttccaaataggagacggaattcgcaccgccgttacaagctc |
54075236 |
T |
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| Q |
105 |
tgttcaagaggttttccgatgcttgcatccagatccgtctgatttgggttcgaattccaaaattggtgtttccctcgagattattggagaaaacatcgtg |
204 |
Q |
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| T |
54075237 |
tgttcaagaggttttccgatgcttgcatccagatccgtctgatttgggttcgaattccgaaattggagtttccctcgagattattggagaaaacatcgtg |
54075336 |
T |
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| Q |
205 |
gttccgtccgtagcgtattacactcccaggcccaataaacccaattctaagcccgtggctgttcaaaagtttgggcctccggcccagcccaaatatttcc |
304 |
Q |
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| T |
54075337 |
gttccgtccgtagcgtattacactcccaggcccaataaacccaattctaagcccgtggcagttcaaaactttgggcctccggcccagcccaaatatttcc |
54075436 |
T |
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| Q |
305 |
tttgtgcatgcacgatggtttataatgtggcgaagtttttgagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatattgtatgataa |
404 |
Q |
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| T |
54075437 |
tttgtgcatgcacgatggtttataatgtggcgaagtttttgagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatattgtatgataa |
54075536 |
T |
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| Q |
405 |
tggaagcgatgatgatgatgatttggagagaataattaaggagctttgtgaagagggttataatataagcacgttgctttggatttggcctaagactcaa |
504 |
Q |
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| T |
54075537 |
tggaagc---gatgatgatgatttggagagaataattaaggagcttcgtgaagagggttataatataagcacgttgctttggatttggcctaagactcaa |
54075633 |
T |
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| Q |
505 |
gaagctggattctctcacagtattttgtactcaaaatccaaaggattatgcacttggatgatgt |
568 |
Q |
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| T |
54075634 |
gaagctggattctcacacagtattttgtactcaaaatccaaaggattatgcacttggatgatgt |
54075697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 48529259 - 48529190
Alignment:
| Q |
74 |
gagacggaattcgcaccgccgttacaagctctgttcaagaggttttccgatgcttgcatccagatccgtc |
143 |
Q |
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| T |
48529259 |
gagacggaatttgcaccgccgttacaagctccattcaagaggttttcccatgcctccatccagatccgtc |
48529190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 34849736 - 34849783
Alignment:
| Q |
74 |
gagacggaattcgcaccgccgttacaagctctgttcaagaggttttcc |
121 |
Q |
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| T |
34849736 |
gagacgtaattcgcaccgccgttacaagctccgttcaagaggttttcc |
34849783 |
T |
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