View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11766_high_1 (Length: 855)
Name: NF11766_high_1
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11766_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Original strand, 28343342 - 28343857
Alignment:
| Q |
11 |
gaagcataggtgaagatagccatggatggaaggtagagaaggaattgaagcaaacaatgatggtgttgttgtcaaagtttagctcaactatatgcaacgt |
110 |
Q |
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| T |
28343342 |
gaagcataggtgaagatagccatggatggaaggtagagaaggaattgaagcaaacaatgatggtgttgttgtcaaagtttagctcaactatatgcaacgt |
28343441 |
T |
|
| Q |
111 |
tgagttcaatgctttattaattaaattgatttaattaaaagtagtgacattagcatatttattaataaatgttctcagtatagttggtaattaattggaa |
210 |
Q |
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| T |
28343442 |
tgagttcaatgctttattaattaaattgatttaattaaaagtagtgacattagcatatttattaataaatgttctcagtatagttggtaattaattggaa |
28343541 |
T |
|
| Q |
211 |
caaaatacaaatggaagagtctcaataattggtacagtatttggacttactctagtataacataagtatctacaaaggtgtttagaaaaacttataaaaa |
310 |
Q |
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| T |
28343542 |
caaaatacaaatggaagagtctcaataattggtacagtatttggacttactctagtataacataagtatctacaaaggtgtttagaaaaacttataaaaa |
28343641 |
T |
|
| Q |
311 |
tagtttataatatgtctaaagttggacatactctatagtaacataagtatttacaaaatgttttagttaaacttataaaactattttatgttaagtgatg |
410 |
Q |
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| T |
28343642 |
tagtttataatatgtataaagttggacatactctatagtaacataagtatttacaaaatgttttagttaaacttataaaactattttatgttaagtgatg |
28343741 |
T |
|
| Q |
411 |
tgaccaagtagagtattgttttttaata---aataaaagtcatctgaacttgcaatgcaggacataaaagacaaatacaaaaggttagcattcataacta |
507 |
Q |
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| T |
28343742 |
tgaccaagtagagtattgttttttaataaataataaaagtcatctgaacttgcaatgcaggacataaaagacaaatacaaaaagttagcattcataacta |
28343841 |
T |
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| Q |
508 |
atcatagtacataaag |
523 |
Q |
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|||||||||||||||| |
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| T |
28343842 |
atcatagtacataaag |
28343857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 590 - 836
Target Start/End: Original strand, 28343924 - 28344170
Alignment:
| Q |
590 |
cagataattagttgaattagtccaactctcactaatattttctgagagcaaatgctcaatcggccggcacattgtttttattatatatttgaagacattg |
689 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28343924 |
cagataattaattgaattagtccaactctcactaatattttctgagagcaaatgctcaatcggccggcacattgtttttattatatatttgaagacattg |
28344023 |
T |
|
| Q |
690 |
tcaaattgacatatttaatgagataaaaggaacaagacaaagtgtatatactttggcaagttaatctgacacaacaagaagatacagttgtaagatcaga |
789 |
Q |
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| T |
28344024 |
tcaaattgacatatttaatgagataaaaggaacaagacaaagtgtatatactttggcaagttaatctgacacaacaagaagatacagttgtaagatcaga |
28344123 |
T |
|
| Q |
790 |
gatgggatataccaaacatgtaatgctggtgccggctatatcctcag |
836 |
Q |
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| T |
28344124 |
gatgggatataccaaacatgtaatgctggtgccggctatatcctcag |
28344170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 238 - 400
Target Start/End: Original strand, 28336467 - 28336633
Alignment:
| Q |
238 |
attggtacagtatttggacttactctagtataacataagtatctacaaaggtgtttagaaaaacttataaaaatagtttataatatgtctaaagttggac |
337 |
Q |
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|||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| |
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| T |
28336467 |
attggtactgtatttggacttattctagtataacataggtatctacaaaggtgtttagaaaaccttataaaaatagtttataatatgtct--atttggac |
28336564 |
T |
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| Q |
338 |
atactctat-------agtaacataagtatttacaaaatgttttagttaaacttataaaactattttatg |
400 |
Q |
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| T |
28336565 |
agactctatagtctagagtaacataagtacttacaaaatg-tttaggtaaatttataaaactattttatg |
28336633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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