View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11766_high_11 (Length: 334)
Name: NF11766_high_11
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11766_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 28661447 - 28661143
Alignment:
| Q |
17 |
ctataaacttataactgacatattctttacttgtgcttctataatatctctatatgacaaagttatatactgcatcttatgatttcttttgttaatgtaa |
116 |
Q |
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| T |
28661447 |
ctataaacttataactgacatattctttacttgtgcttctataatatctctatatgacaaagttatatactgcatcttatgatttcttttgttaatgtaa |
28661348 |
T |
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| Q |
117 |
tgagacaaaagtcttatacctacctacttatggtccaaatcacttttttaattaattaattcnnnnnnnnnnagtgatattggtctttgtcaatttttgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28661347 |
tgagacaaaagtcttatacctacctacttatggtccaaatcacttttttaattaattaattc--ctttttttagtgatattggtctttgtcaatttttgt |
28661250 |
T |
|
| Q |
217 |
ccttgttatgttccatgatctagaattattagattcttctcataatccatgaaggtttgtacaccctcataaagcagtaattcttctatcctatctatca |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28661249 |
ccttgttatgtttcatgatctagaattattagattcttctcataatccatgaaggtttgtacaccctcataaagcagtaattcttctatcctatctatca |
28661150 |
T |
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| Q |
317 |
ctttcat |
323 |
Q |
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||||||| |
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| T |
28661149 |
ctttcat |
28661143 |
T |
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