View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11766_high_12 (Length: 325)
Name: NF11766_high_12
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11766_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 2 - 310
Target Start/End: Complemental strand, 27312904 - 27312596
Alignment:
| Q |
2 |
tcacttccaaacctttcgtactgcacttgaccaatcccacttccacaaccaaaacttcttgacctatatccgcacgtgccactgctcattctcgtaaaac |
101 |
Q |
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| T |
27312904 |
tcacttccaaacctttcgtactgcacttgaccaatcccacttccacaaccaaaacttcttgacctatatccgaacgtgccactgctcattctcgtaaaac |
27312805 |
T |
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| Q |
102 |
ttacacaactttttgcacgcttaagcgtcgtcgtgttcatcatcatctgctttcgaactttatcgggtaatctcaatgtaaacctctcacaatcctcacc |
201 |
Q |
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| T |
27312804 |
ttacacaactttttgcacgcttaagtgtcgtcgtgttcaacatcatctgctttcgaactttatcgggtaacctcagtgtaaacctctcacaatcctcacc |
27312705 |
T |
|
| Q |
202 |
tggttgcaccaacacacctgttgagtttgaccgtgataacaagagaatagataagaatcctgttgatcttgaccgtgttggtgcagaatatgttttagac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27312704 |
tggttgcaccaacacacctgttgagtttgaccgtgataacaagagaatagataagaatcctgttgatcttgaccgtgttggtgcagaatatgttttagac |
27312605 |
T |
|
| Q |
302 |
ctatgaagt |
310 |
Q |
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||| ||||| |
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| T |
27312604 |
ctacgaagt |
27312596 |
T |
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