View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11766_high_18 (Length: 267)
Name: NF11766_high_18
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11766_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 78 - 221
Target Start/End: Original strand, 10773607 - 10773750
Alignment:
| Q |
78 |
aaggttcgaacttcatacctttgatatattatacattatctatatcaactgagataaactcgaggacaatttatatcnnnnnnngccccaaggttatgat |
177 |
Q |
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| T |
10773607 |
aaggttcgaacttcataccttggatatattatgcattatctatatcaactgagataaactcgaggacaatttatatctttttttgccccaacgttatgat |
10773706 |
T |
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| Q |
178 |
ttgggaatataaagacaaaatatactttttaaattaaaattaag |
221 |
Q |
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| T |
10773707 |
ttgggaatataaagacaaaatatactttttaaattaaaattaag |
10773750 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 38911358 - 38911309
Alignment:
| Q |
81 |
gttcgaacttcatacctttgatatattatacattatctatatcaactgag |
130 |
Q |
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| T |
38911358 |
gttcgaacttcaaaccttgcatatattatacattgtctttatcaactgag |
38911309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 5185167 - 5185130
Alignment:
| Q |
101 |
atatattatacattatctatatcaactgagataaactc |
138 |
Q |
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| T |
5185167 |
atatattatacattatctataccaactgagttaaactc |
5185130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 470321 - 470369
Alignment:
| Q |
82 |
ttcgaacttcatacctttgatatattatacattatctatatcaactgag |
130 |
Q |
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| T |
470321 |
ttcgaacctcatactttacatatattatacattatctttatcaactgag |
470369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 7829954 - 7829898
Alignment:
| Q |
82 |
ttcgaacttcatacctttgatatattatacattatctatatcaactgagataaactc |
138 |
Q |
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||||||||||| ||||| ||||||||| |||| || |||||||||||| ||||||| |
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| T |
7829954 |
ttcgaacttcagaccttacatatattatgcattgtccatatcaactgagttaaactc |
7829898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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