View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11766_high_3 (Length: 621)
Name: NF11766_high_3
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11766_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 603
Target Start/End: Complemental strand, 43321931 - 43321328
Alignment:
| Q |
19 |
aaaaagaaagacgactagttatctcttaaattgcgagagattgaaacacccacaccctcaatttattct-----------agtgtaattgatctcctagt |
107 |
Q |
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| T |
43321931 |
aaaaaaaaagacgattagttatctcttaaattgcgagagattgaaacacccacaccctcaatttattcttgtgtaacactagtgtaattgatctcctagt |
43321832 |
T |
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| Q |
108 |
atgtatctataaacccttatgaagatgaatcaaacttcaaatgtttaatactttaatatactattagacctatcaaaattttattgaatatttgtaaaac |
207 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43321831 |
atgtatctatagacccatatgaagatgaatcaaacttcaaatgtttaatactttaatatactattagacctatcaaacttttattgaatatttgtaaaac |
43321732 |
T |
|
| Q |
208 |
aaaactcatcatattacatagtaaatttagtcatatcatataaattaaggttaaacatatttttattccctacaaaatcacgatattttaagcttagttc |
307 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
43321731 |
aaaactcatcatattacattgtaaatttagttatatcatataaattagggttaaacatatttttattccctacaaaatcacgatattttaagtttagtcc |
43321632 |
T |
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| Q |
308 |
ctnnnnnnnntcatgtttagtccttatttgtattttatgaagactattttgaggtcaaagtgtcannnnnnngtaaaacattttaattaggaactattcc |
407 |
Q |
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| T |
43321631 |
ctaaaaaaaatcatgtttagtccttatttgtattttatgaagactattttgaggtcaaagtgtcatttttttgtaaaacattttaattagggactattcc |
43321532 |
T |
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| Q |
408 |
tacaaattgcaatattatggagaaataaaattacgattagattttaatagagaataaacttaaaag--------ttttgtagggaataaaactaaaatat |
499 |
Q |
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| T |
43321531 |
tacaaattgcaatattatggagaaataaaattacgattagaatttaatagagactaaacttaaaagttttgtgattttgtagagaataaaactaaaatat |
43321432 |
T |
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| Q |
500 |
tttgatatttacttaaaataagataaatgccgatcatttatgtgtgataaaaatggtgtatttagaggcttggtcggtcctttccttttaccttgggatt |
599 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| ||||||| |
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| T |
43321431 |
tttgatatttacttaaaataaattaaatgccgatcatttatgtgtgataaaaatgatgtatttagaggcttgctcggtcctttcctcttaccgtgggatt |
43321332 |
T |
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| Q |
600 |
ttta |
603 |
Q |
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|||| |
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| T |
43321331 |
ttta |
43321328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 472
Target Start/End: Original strand, 31994786 - 31994858
Alignment:
| Q |
400 |
actattcctacaaattgcaatattatggagaaataaaattacgattagattttaatagagaataaacttaaaa |
472 |
Q |
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| T |
31994786 |
actattcttacaaattacaatattatggagaactaaaattactattaaaattttaaagggattaaacttaaaa |
31994858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 395 - 475
Target Start/End: Complemental strand, 33038325 - 33038245
Alignment:
| Q |
395 |
taggaactattcctacaaattgcaatattatggagaaataaaattacgattagattttaatagagaataaacttaaaagtt |
475 |
Q |
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|||||||||||| |||||| ||||||||||||||| | ||||||| |||| | |||||||| | |||||||||||||| |
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| T |
33038325 |
taggaactattcttacaaactgcaatattatggaggattaaaattttcattaaaatttaataggaactaaacttaaaagtt |
33038245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 472
Target Start/End: Original strand, 10467542 - 10467619
Alignment:
| Q |
395 |
taggaactattcctacaaattgcaatattatggagaaataaaattacgattagattttaatagagaataaacttaaaa |
472 |
Q |
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| T |
10467542 |
tagggactattcttacaagttacaatattatggaggattaaaattaccattaaaattttataaggaataaacttaaaa |
10467619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 11297754 - 11297807
Alignment:
| Q |
256 |
ggttaaacatatttttattccctacaaaatcacgatattttaagcttagttcct |
309 |
Q |
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||||||| || ||||||||||||||||||| | || ||||||||||||||||| |
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| T |
11297754 |
ggttaaatatgtttttattccctacaaaataatgagtttttaagcttagttcct |
11297807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 40390874 - 40390939
Alignment:
| Q |
244 |
catataaattaaggttaaacatatttttattccctacaaaatcacgatattttaagcttagttcct |
309 |
Q |
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|||||||| |||||||||| || |||||| |||||||||||||| || ||| ||| ||||||||| |
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| T |
40390874 |
catataaaataaggttaaatatgtttttagtccctacaaaatcatgagttttcaagtttagttcct |
40390939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 475
Target Start/End: Original strand, 4405495 - 4405555
Alignment:
| Q |
415 |
tgcaatattatggagaaataaaattacgattagattttaatagagaataaacttaaaagtt |
475 |
Q |
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||||||||| ||||| | ||||||||| |||| ||||||||||||| | || ||||||||| |
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| T |
4405495 |
tgcaatattttggaggattaaaattacaattaaattttaatagagatttaatttaaaagtt |
4405555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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