View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11766_low_10 (Length: 453)
Name: NF11766_low_10
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11766_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 68 - 435
Target Start/End: Complemental strand, 40599582 - 40599220
Alignment:
| Q |
68 |
tttatatgcccacagattttccgaaccaagattaataattgaagtaggaccccattctatcttctctgtattttcgttgaagaaacaaaccaggttgact |
167 |
Q |
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| T |
40599582 |
tttatatgcccacagattttccgaaccaagattaataattgaagtaggaccccattctatcttctctgtattttcgttgaagaaacaaaccaggttgact |
40599483 |
T |
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| Q |
168 |
acttgtttctttcttgtaagttttggtgagttcaagtttgaatcagcttcttatttataaatgaagcttcctatgaaatgaaataatcacatagccatca |
267 |
Q |
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| T |
40599482 |
acttgtttctttcttgtaagttttggtgagttcaagtttgaatcagcttcttatttataaatgaagcttcctatgaaat-----aatcacatagccatca |
40599388 |
T |
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| Q |
268 |
ttattgttactacacaaaagtgtggacttgacttgatgatatctcatatatagagtctagttggaagctgatcacatcacacttcacaatatatacatct |
367 |
Q |
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| T |
40599387 |
ttattgttactacacaaaagtgtggacttgacttgatgatatctcatatatagagtctagttggaagctgatcacatcacacttcacaatatatacatct |
40599288 |
T |
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| Q |
368 |
accactcaccctccaaccatttatttgttgactatccttctactttgaagctaagagttgaagctaag |
435 |
Q |
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| T |
40599287 |
accactcaccctccaaccatttatttgttgactaaccttctactttgaagctaagagttgaagctaag |
40599220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 40599644 - 40599600
Alignment:
| Q |
10 |
gtttgattttttactttgtttgtaaaaaaattcaactgagagaag |
54 |
Q |
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| T |
40599644 |
gtttgattttttacgttgtttataaaaaaattcaattgagagaag |
40599600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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