View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11766_low_11 (Length: 376)

Name: NF11766_low_11
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11766_low_11
NF11766_low_11
[»] chr4 (2 HSPs)
chr4 (18-354)||(31245675-31246011)
chr4 (52-101)||(14637230-14637279)
[»] chr6 (1 HSPs)
chr6 (23-354)||(13609731-13610065)
[»] chr8 (3 HSPs)
chr8 (182-354)||(6472466-6472638)
chr8 (52-104)||(12187991-12188043)
chr8 (52-104)||(12432419-12432471)
[»] chr7 (1 HSPs)
chr7 (18-107)||(14724933-14725022)
[»] chr5 (1 HSPs)
chr5 (18-107)||(17598740-17598829)
[»] scaffold0428 (1 HSPs)
scaffold0428 (31-104)||(8158-8231)
[»] scaffold0005 (1 HSPs)
scaffold0005 (52-101)||(180013-180062)
[»] scaffold0294 (1 HSPs)
scaffold0294 (64-108)||(10120-10164)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 31245675 - 31246011
Alignment:
Q  18 aaggacagatattatggatgtactccaaattagttatgatggactagatgatacagaaaaagatatatttctagatattgcttgtttcttttatgaaaaa 117  Q
    |||||||||||||||||||||||| | |||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||    
T  31245675 aaggacagatattatggatgtacttcgaattagttttgatggactagaggatacagaaaaggatatatttttagatattgcttgtttcttttataaaaaa 31245774  T
Q  118 gaggagacatatgtgaagagagttttagatttccgtggatttcatcctgaaattggtttaccagttctgattgataaatcattcataacctgtaagaagg 217  Q
      ||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||  ||||||  ||||||| ||||||||||||||| |||| |    
T  31245775 tcggagacatacgtgaataaagttttagattttcgtggatttcatcctgaaattggtttaagagttcttgttgataagtcattcataacctgtgagaacg 31245874  T
Q  218 ggtacatatatatgcatgacttgttcaaagaactcggcaagagcattattagagaaaaatcacccaaagaaccaagaaagtggagcaggttgtgggacca 317  Q
    ||   || | ||||||||| |||||||||||||| |||||||| ||  |||| ||||||||||||||||||||||||||||||| |||| |||||||| |    
T  31245875 ggagaatttttatgcatgatttgttcaaagaactaggcaagagtatcgttagggaaaaatcacccaaagaaccaagaaagtggaacaggatgtgggacta 31245974  T
Q  318 caagcatgtccacaatgttgtctcggaaaacatggta 354  Q
    |||| |||||||||||||| | || ||||||||||||    
T  31245975 caaggatgtccacaatgttatatcagaaaacatggta 31246011  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 14637279 - 14637230
Alignment:
Q  52 tatgatggactagatgatacagaaaaagatatatttctagatattgcttg 101  Q
    ||||||||| ||||||||||||| ||||| ||||||||||| ||||||||    
T  14637279 tatgatggattagatgatacagagaaagaaatatttctagacattgcttg 14637230  T

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Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 354
Target Start/End: Original strand, 13609731 - 13610065
Alignment:
Q  23 cagatattatggatgtactccaaattagttatgatggactagatgatacagaaaaagatatatttctagatattgcttgtttcttttatgaaaaagag-g 121  Q
    |||| |||||||||||||| |   ||||||||||||||||| | |||| |||||| || || ||||| |||||||||||||||||| || | | |||| |    
T  13609731 cagaaattatggatgtactacggcttagttatgatggactaaaggatatagaaaaggagatttttctggatattgcttgtttctttgat-agagagagcg 13609829  T
Q  122 agacatatgtgaagagagttttagatttccgtggatttcatcctgaaattggtttaccagttctgattgataaatcattcataacctgtaagaaggggt- 220  Q
    ||||||| ||||||| |||||||||||| |||||||||||||| |||||||| |||  ||||||  ||||||||||||| ||||||| |  || |   |     
T  13609830 agacatacgtgaagaaagttttagattttcgtggatttcatcccgaaattggcttaagagttctctttgataaatcattaataacctatgggaggttttc 13609929  T
Q  221 -ac-atatatatgcatgacttgttcaaagaactcggcaagagcattattagagaaaaatcacccaaagaaccaagaaagtggagcaggttgtgggaccac 318  Q
     || || | |||||||   ||||| |||||||| |||| ||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13609930 tacgatttctatgcatcgtttgttaaaagaacttggcaggagtatcattaaagaaaaatcacccaaagaaccaagaaagtggaacaggttgtgggaccac 13610029  T
Q  319 aagcatgtccacaatgttgtctcggaaaacatggta 354  Q
    ||| |||||||||||||| |||||||||| ||||||    
T  13610030 aaggatgtccacaatgttatctcggaaaaaatggta 13610065  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 182 - 354
Target Start/End: Complemental strand, 6472638 - 6472466
Alignment:
Q  182 ttctgattgataaatcattcataacctgtaagaaggggtacatatatatgcatgacttgttcaaagaactcggcaagagcattattagagaaaaatcacc 281  Q
    |||||||||||||||||||||||||| |  ||| ||||   || | ||||||||| |||||||||||||| || ||||||||  ||||||||||||||      
T  6472638 ttctgattgataaatcattcataaccagcgagatggggagaatttgtatgcatgatttgttcaaagaacttgggaagagcatcgttagagaaaaatcaat 6472539  T
Q  282 caaagaaccaagaaagtggagcaggttgtgggaccacaagcatgtccacaatgttgtctcggaaaacatggta 354  Q
     ||||||||||||||||||| | ||||||||||| ||||  |||| ||||||||| |||| ||||||||||||    
T  6472538 gaaagaaccaagaaagtggaactggttgtgggactacaaagatgttcacaatgttatctcagaaaacatggta 6472466  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 12188043 - 12187991
Alignment:
Q  52 tatgatggactagatgatacagaaaaagatatatttctagatattgcttgttt 104  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||| |||||    
T  12188043 tatgatgaattagatgatacagaaaaagatatatttctagacattgcatgttt 12187991  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 12432471 - 12432419
Alignment:
Q  52 tatgatggactagatgatacagaaaaagatatatttctagatattgcttgttt 104  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||| |||||    
T  12432471 tatgatgaattagatgatacagaaaaagatatatttctagacattgcatgttt 12432419  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 14724933 - 14725022
Alignment:
Q  18 aaggacagatattatggatgtactccaaattagttatgatggactagatgatacagaaaaagatatatttctagatattgcttgtttctt 107  Q
    |||| ||||||||||||||||||| | |||||||| ||| |||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  14724933 aagggcagatattatggatgtacttcgaattagttttgaaggactaaaggatacagaaaaggatatatttctagatattgcttgtttctt 14725022  T

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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 17598829 - 17598740
Alignment:
Q  18 aaggacagatattatggatgtactccaaattagttatgatggactagatgatacagaaaaagatatatttctagatattgcttgtttctt 107  Q
    |||| |||||||||||||||||||   |||||||| ||| |||||| | ||||||||||| |||||||||||||||||||||||||||||    
T  17598829 aagggcagatattatggatgtacttttaattagttttgaaggactaaaggatacagaaaaggatatatttctagatattgcttgtttctt 17598740  T

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Target: scaffold0428 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 8231 - 8158
Alignment:
Q  31 atggatgtactccaaattagttatgatggactagatgatacagaaaaagatatatttctagatattgcttgttt 104  Q
    |||||||| || ||| | ||||||||||| ||||| || || |||||||| |||||||| ||||||||||||||    
T  8231 atggatgtgcttcaattaagttatgatgggctagaggaaacggaaaaagaaatatttcttgatattgcttgttt 8158  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 180013 - 180062
Alignment:
Q  52 tatgatggactagatgatacagaaaaagatatatttctagatattgcttg 101  Q
    ||||||||| ||||||||||||| ||||| ||||||||||| ||||||||    
T  180013 tatgatggattagatgatacagagaaagaaatatttctagacattgcttg 180062  T

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Target: scaffold0294 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 10164 - 10120
Alignment:
Q  64 gatgatacagaaaaagatatatttctagatattgcttgtttcttt 108  Q
    ||||||||||||||||||||||| || || || ||||||||||||    
T  10164 gatgatacagaaaaagatatattccttgacatagcttgtttcttt 10120  T

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