View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11766_low_13 (Length: 325)
Name: NF11766_low_13
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11766_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 2 - 310
Target Start/End: Complemental strand, 27312904 - 27312596
Alignment:
| Q |
2 |
tcacttccaaacctttcgtactgcacttgaccaatcccacttccacaaccaaaacttcttgacctatatccgcacgtgccactgctcattctcgtaaaac |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27312904 |
tcacttccaaacctttcgtactgcacttgaccaatcccacttccacaaccaaaacttcttgacctatatccgaacgtgccactgctcattctcgtaaaac |
27312805 |
T |
|
| Q |
102 |
ttacacaactttttgcacgcttaagcgtcgtcgtgttcatcatcatctgctttcgaactttatcgggtaatctcaatgtaaacctctcacaatcctcacc |
201 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
27312804 |
ttacacaactttttgcacgcttaagtgtcgtcgtgttcaacatcatctgctttcgaactttatcgggtaacctcagtgtaaacctctcacaatcctcacc |
27312705 |
T |
|
| Q |
202 |
tggttgcaccaacacacctgttgagtttgaccgtgataacaagagaatagataagaatcctgttgatcttgaccgtgttggtgcagaatatgttttagac |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27312704 |
tggttgcaccaacacacctgttgagtttgaccgtgataacaagagaatagataagaatcctgttgatcttgaccgtgttggtgcagaatatgttttagac |
27312605 |
T |
|
| Q |
302 |
ctatgaagt |
310 |
Q |
| |
|
||| ||||| |
|
|
| T |
27312604 |
ctacgaagt |
27312596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University