View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11766_low_16 (Length: 304)
Name: NF11766_low_16
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11766_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 94 - 287
Target Start/End: Original strand, 15967424 - 15967617
Alignment:
| Q |
94 |
aaacataccgcaaaaccaaaagtcacctacaacttgttagcaatgcttaaatcaatattggcaacatatagcggacaagctacatttctatacagggtaa |
193 |
Q |
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| T |
15967424 |
aaacataccgcaaaaccaaaagttacctacaacttgttagcaatgcttccatcaatattggcaacatacagtgaacaagctacatttctacacagggtaa |
15967523 |
T |
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| Q |
194 |
ttttgcaaacaaaacagcttatccactatatgctgccaatattgatattggctgttttaaaattgaaagaaacttgaaagtgaaccctagaaac |
287 |
Q |
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| T |
15967524 |
ttttgcaaacaaaacagcttatccactatatgctgccaatattgatattggctgttttaaaattgaaagaaacttaaaagtgaaccctagaaac |
15967617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 15966846 - 15966901
Alignment:
| Q |
7 |
gagaatttcgaacgatatctaatgatcttcacgccctttccaaatgattcaaccta |
62 |
Q |
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| T |
15966846 |
gagaatttcgaacgatagctaatgatcttcacgccctttccaaatgcttcaaccta |
15966901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 15967196 - 15967230
Alignment:
| Q |
61 |
tatttaataacattcattcacaatgatacatttaa |
95 |
Q |
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| T |
15967196 |
tatttaataacattcattcacaatgatacatttaa |
15967230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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