View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11766_low_17 (Length: 304)

Name: NF11766_low_17
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11766_low_17
NF11766_low_17
[»] chr5 (2 HSPs)
chr5 (16-286)||(10772876-10773146)
chr5 (169-213)||(39105503-39105547)
[»] chr2 (3 HSPs)
chr2 (169-225)||(14220797-14220853)
chr2 (168-213)||(41812079-41812124)
chr2 (169-213)||(18066167-18066211)
[»] chr3 (2 HSPs)
chr3 (169-214)||(28240357-28240401)
chr3 (169-213)||(21367706-21367750)
[»] chr1 (2 HSPs)
chr1 (169-213)||(7941645-7941689)
chr1 (169-213)||(49938786-49938830)
[»] chr8 (2 HSPs)
chr8 (169-211)||(31751546-31751588)
chr8 (216-261)||(27465446-27465493)
[»] chr7 (1 HSPs)
chr7 (169-213)||(39967959-39968003)
[»] chr4 (2 HSPs)
chr4 (169-213)||(1706661-1706705)
chr4 (169-213)||(55414407-55414451)


Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 10773146 - 10772876
Alignment:
Q  16 atgaatgatgtacttgctgctctcgcgcgtgaagctggttggattgttgatgctgatggaactacttatcgccagtgtctccctccttccaacatggttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10773146 atgaatgatgtacttgctgctctcgcgcgtgaagctggttggattgttgatgctgatggaactacttatcgccagtgtctccctccttccaacatggttg 10773047  T
Q  116 ctttcattctttttctttcaattttgattattcagttttaagtcaaacttttgaaataagttgaaaatagctttttaacaatgtcataagctgttttccc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10773046 ctttcattctttttctttcaattttgattattcagttttaagtcaaacttttgaaataagttgaaaatagctttttaacaatgtcataagctgttttccc 10772947  T
Q  216 aaacagtctcgcaatcttacgccaatagataagttcaaataagtcagtccatacaagcgctagttagttgt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10772946 aaacagtctcgcaatcttacgccaatagataagttcaaataagtcagtccatacaagcgctagttagttgt 10772876  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 39105503 - 39105547
Alignment:
Q  169 aaataagttgaaaatagctttttaacaatgtcataagctgttttc 213  Q
    ||||||| | |||||||||| | ||||||||||||||||||||||    
T  39105503 aaataagctaaaaatagcttatgaacaatgtcataagctgttttc 39105547  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 14220853 - 14220797
Alignment:
Q  169 aaataagttgaaaatagctttttaacaatgtcataagctgttttcccaaacagtctc 225  Q
    ||||||| |||||| ||||| | ||||||||||||||| ||||||||||||||||||    
T  14220853 aaataagctgaaaagagcttataaacaatgtcataagccgttttcccaaacagtctc 14220797  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 41812124 - 41812079
Alignment:
Q  168 gaaataagttgaaaatagctttttaacaatgtcataagctgttttc 213  Q
    ||||||||||||||| ||||| | || |||||||||||||||||||    
T  41812124 gaaataagttgaaaaaagcttatgaaaaatgtcataagctgttttc 41812079  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 18066167 - 18066211
Alignment:
Q  169 aaataagttgaaaatagctttttaacaatgtcataagctgttttc 213  Q
    ||||||| |||||||||||| | | ||||||||||||||||||||    
T  18066167 aaataaggtgaaaatagcttatgagcaatgtcataagctgttttc 18066211  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 28240357 - 28240401
Alignment:
Q  169 aaataagttgaaaatagctttttaacaatgtcataagctgttttcc 214  Q
    |||||||||||||||||||||  |||||||||||||||||||||||    
T  28240357 aaataagttgaaaatagctttg-aacaatgtcataagctgttttcc 28240401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 21367706 - 21367750
Alignment:
Q  169 aaataagttgaaaatagctttttaacaatgtcataagctgttttc 213  Q
    ||||||| |||||| ||||| | ||||||||||||||||||||||    
T  21367706 aaataagctgaaaacagcttgtgaacaatgtcataagctgttttc 21367750  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 7941645 - 7941689
Alignment:
Q  169 aaataagttgaaaatagctttttaacaatgtcataagctgttttc 213  Q
    ||||||||||||||||||||   ||||||||||||||||||||||    
T  7941645 aaataagttgaaaatagcttcggaacaatgtcataagctgttttc 7941689  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 49938786 - 49938830
Alignment:
Q  169 aaataagttgaaaatagctttttaacaatgtcataagctgttttc 213  Q
    |||||||||||||| ||||||| || | |||||||||||||||||    
T  49938786 aaataagttgaaaaaagcttttgaaaattgtcataagctgttttc 49938830  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 31751588 - 31751546
Alignment:
Q  169 aaataagttgaaaatagctttttaacaatgtcataagctgttt 211  Q
    ||||||| |||||||||||| | ||||||||||||||||||||    
T  31751588 aaataagctgaaaatagcttatgaacaatgtcataagctgttt 31751546  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 27465446 - 27465493
Alignment:
Q  216 aaacagtctcgcaat--cttacgccaatagataagttcaaataagtca 261  Q
    ||||||||||||||   |||| ||||||||||||||||||||||||||    
T  27465446 aaacagtctcgcaagtgcttatgccaatagataagttcaaataagtca 27465493  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 39967959 - 39968003
Alignment:
Q  169 aaataagttgaaaatagctttttaacaatgtcataagctgttttc 213  Q
    |||||||||||||| ||||| | ||||||| ||||||||||||||    
T  39967959 aaataagttgaaaacagcttatgaacaatgccataagctgttttc 39968003  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 1706661 - 1706705
Alignment:
Q  169 aaataagttgaaaatagctttttaacaatgtcataagctgttttc 213  Q
    |||||||||| ||||||||| | ||||||| ||||||||||||||    
T  1706661 aaataagttggaaatagcttatgaacaatgccataagctgttttc 1706705  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 55414451 - 55414407
Alignment:
Q  169 aaataagttgaaaatagctttttaacaatgtcataagctgttttc 213  Q
    |||||||||||||| ||||| | || |||||||||||||||||||    
T  55414451 aaataagttgaaaaaagcttatgaaaaatgtcataagctgttttc 55414407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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