View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11766_low_18 (Length: 268)
Name: NF11766_low_18
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11766_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 19590292 - 19590540
Alignment:
| Q |
18 |
caactaactaactaactaaaataccgttagtcagttaattgaagctctgacacactatataatcaaatccaagataccattgaactcttgagaaatcaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19590292 |
caactaactaactaactaaaataccgttagtcagtttattgaagctctgacacactatataatcaaatccaagataccattgaattcttgagaaatcaca |
19590391 |
T |
|
| Q |
118 |
ccatggatcataacaactctccaccgccacaacaaacttcatctgaacaacaatcacagccaccaaacaactctccaccgccacaatcaccgacgcactt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19590392 |
ccatggatcataacaactctccaccgccacaacaaacttcatctgaacaacaatcactgccaccaaacaactctccactgccacaatcaccgacgcactt |
19590491 |
T |
|
| Q |
218 |
acctacgtctcagcatcaaccatcaccggccaccatgtctcagcatcaa |
266 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
19590492 |
acctacgtctcagcatcaaccatcaccagccaccatgtcgcagcatcaa |
19590540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 19583280 - 19583015
Alignment:
| Q |
19 |
aactaactaactaactaaaataccgttagtcagttaattgaagctctgacacac------------------tatataatcaaatccaagataccattga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| | ||||||||| |
|
|
| T |
19583280 |
aactaactaactaactaaaataccgttagtcagttaattgaagctctcacacacacacacactatatatatatatataatcaaatccatgttaccattga |
19583181 |
T |
|
| Q |
101 |
actcttgagaaatcacaccatggatcataacaactctccaccgccacaacaaacttcatctgaacaacaatcacagccaccaaacaactctccaccgcca |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19583180 |
attcttgagaaatcacaccatggatcataacaactctccaccgccacaacaaacttcacctgaacaacaatcacagccaccaaacaactctccaccgcca |
19583081 |
T |
|
| Q |
201 |
caatcaccgacgcacttacctacgtctcagcatcaaccatcaccggccaccatgtctcagcatcaa |
266 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||| ||| ||| ||||||||| |
|
|
| T |
19583080 |
caatcaccgacgcacttacctacgtcgcagcatcaaccatcaccagccgccacgtcgcagcatcaa |
19583015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 19583029 - 19582985
Alignment:
| Q |
222 |
acgtctcagcatcaaccatcaccggccaccatgtctcagcatcaa |
266 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
19583029 |
acgtcgcagcatcaaccatcaccagccaccatgtcgcagcatcaa |
19582985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 19590556 - 19590600
Alignment:
| Q |
222 |
acgtctcagcatcaaccatcaccggccaccatgtctcagcatcaa |
266 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
19590556 |
acgtcgcagcatcaaccatcaccagccaccatgtcgcagcatcaa |
19590600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University