View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11766_low_2 (Length: 627)

Name: NF11766_low_2
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11766_low_2
NF11766_low_2
[»] chr3 (10 HSPs)
chr3 (366-612)||(28926153-28926399)
chr3 (68-295)||(28917171-28917398)
chr3 (69-344)||(28926385-28926661)
chr3 (429-612)||(28916918-28917101)
chr3 (84-336)||(28903360-28903613)
chr3 (70-295)||(28893397-28893622)
chr3 (408-578)||(28902537-28902707)
chr3 (69-295)||(28936637-28936865)
chr3 (379-534)||(28892636-28892791)
chr3 (379-487)||(28935823-28935931)
[»] chr5 (1 HSPs)
chr5 (532-612)||(34009551-34009631)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 366 - 612
Target Start/End: Complemental strand, 28926399 - 28926153
Alignment:
Q  366 aaagaaacagaaaccaggctgtaaaaattttccctttctctgtatatcttgtaattatgtgctttttcatttgcaggagaagatagatatgagagatcca 465  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28926399 aaagaaacagaaaccaggctgtataaattttccctttctctgtatatcttgtaattatgtgctttttcatttgcaggagaagatagatatgagagatcca 28926300  T
Q  466 gatacagttgaaagttactttttagaatattatcaagttatcaaagaaagagaagggctgaattctcaggatatttacattgcccgtggcatcgttaaaa 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28926299 gatacagttgaaagttactttttagaatattatcaagttatcaaagaaagagaagggctgaattctcaggatatttacattgcccgtgacatcgttaaaa 28926200  T
Q  566 atgggaaagacaagcgtgacttggatccatatgaaataggtgagggg 612  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||    
T  28926199 atgggaaaaacaagcgtgacttggatccgtatgaaataggtgagggg 28926153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 68 - 295
Target Start/End: Complemental strand, 28917398 - 28917171
Alignment:
Q  68 ggatgccgaatgacttttgaataattttataggttcccatttttgctacctttgcggtagagcatcgaagtttaggtgcttctgttgcccaatagctgtt 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28917398 ggatgccgaatgacttttgaataattttataggttcccatttttgctacctttgcggtagagcatcgaagtttaggtgcttctgttgcccaatagctgtt 28917299  T
Q  168 tgtggaaaatgcttctatgatgctgaatttgctactgtcaaaacaaccaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatg 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28917298 tgtggaaaatgcttctatgatgctgaatttgctactgtcaaaacaaccaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatg 28917199  T
Q  268 ctgatgttgattctgatggggtgagata 295  Q
    ||||  |||||||||||||||| |||||    
T  28917198 ctgacattgattctgatggggttagata 28917171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 69 - 344
Target Start/End: Complemental strand, 28926661 - 28926385
Alignment:
Q  69 gatgccgaatgacttttgaataatttt-ataggttcccatttttgctacctttgcggtagagcatcgaagtttaggtgcttctgttgcccaatagctgtt 167  Q
    ||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  28926661 gatgctgaatggcttttgaataatttttataggttcccattattgctacctttgcggtagagcatcgaagtttatgtgcttgtgttgcccaatagctgtt 28926562  T
Q  168 tgtggaaaatgcttctatgatgctgaatttgctactgtcaaaacaaccaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatg 267  Q
    ||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28926561 tgtggaagatgcttctatgatgctgaatttgccactgtcaaaagaaacaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatg 28926462  T
Q  268 ctgatgttgattctgatggggtgagatannnnnnncaatcatgccttatattatgtccagcaaaagaaacagaaacc 344  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  28926461 ctgatgttgattctgatggggtgagatgtttttttcaatcatgccttatattatgtccagcaaaagaaacagaaacc 28926385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 429 - 612
Target Start/End: Complemental strand, 28917101 - 28916918
Alignment:
Q  429 ttttcatttgcaggagaagatagatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatcaaagaaagagaagggctgaat 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||  ||||    
T  28917101 ttttcatttgcaggagaagatagatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatcaaaaaaaaggaagggtggaat 28917002  T
Q  529 tctcaggatatttacattgcccgtggcatcgttaaaaatgggaaagacaagcgtgacttggatccatatgaaataggtgagggg 612  Q
    ||||||||| |||| |||||||||| |||| |||||||||| ||   ||||||||||||||| || ||||||| ||||||||||    
T  28917001 tctcaggatgtttatattgcccgtgacatcattaaaaatggaaacatcaagcgtgacttggaaccgtatgaaagaggtgagggg 28916918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 84 - 336
Target Start/End: Complemental strand, 28903613 - 28903360
Alignment:
Q  84 ttgaataatttt-ataggttcccatttttgctacctttgcggtagagcatcgaagtttaggtgcttctgttgcccaatagctgtttgtggaaaatgcttc 182  Q
    |||||||||||| |||| |||||||| ||||||||  |||||| ||  ||| ||||||| |||||| |||||| |||||||| |||||||||||||||||    
T  28903613 ttgaataatttttatagcttcccattcttgctaccaatgcggtggaatatcaaagtttatgtgcttgtgttgcacaatagctttttgtggaaaatgcttc 28903514  T
Q  183 tatgatgctgaatttgctactgtcaaaacaaccaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatgctgatgttgattctg 282  Q
    |||| |||||||||||||  |||||||  || ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||||||    
T  28903513 tatggtgctgaatttgctcttgtcaaaggaaacaaaggattttgtaggcactgctcaaaacttgcctttctaattgagaaaaatgctgacgtagattctg 28903414  T
Q  283 atggggtgagatannnnnnncaatcatgccttatattatgtccagcaaaagaaa 336  Q
    ||||||| ||||         ||||| |||||||||||||| ||||||||||||    
T  28903413 atggggtaagattttttttttaatcacgccttatattatgtgcagcaaaagaaa 28903360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 70 - 295
Target Start/End: Complemental strand, 28893622 - 28893397
Alignment:
Q  70 atgccgaatgacttttgaataattttataggttcccatttttgctacctttgcggtagagcatcgaagtttaggtgcttctgttgcccaatagctgtttg 169  Q
    |||| |||||||||||||||||||||||||||||||||| |||  ||   |||  | ||||||||||||||| |||||| || |||||||||||| ||||    
T  28893622 atgctgaatgacttttgaataattttataggttcccattattgtaacggatgccatggagcatcgaagtttatgtgcttgtgctgcccaatagctttttg 28893523  T
Q  170 tggaaaatgcttctatgatgctgaatttgctactgtcaaaacaaccaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaatgct 269  Q
    | ||||||||||| ||| |||||||||||||  |||||||| || || |||||||||||||||||||||||||||||| | | ||||||||| ||||| |    
T  28893522 tagaaaatgcttccatggtgctgaatttgctcttgtcaaaagaaacagaggattttgtaggcactgctcaaaacttgcctatttaattgagaaaaatgtt 28893423  T
Q  270 gatgttgattctgatggggtgagata 295  Q
    ||||| |||||||||||||| |||||    
T  28893422 gatgtcgattctgatggggtaagata 28893397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 408 - 578
Target Start/End: Complemental strand, 28902707 - 28902537
Alignment:
Q  408 tatatcttgtaattatgtgctttttcatttgcaggagaagatagatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatc 507  Q
    |||||||| | |||||||  |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  28902707 tatatcttatgattatgtattttttcatttgcaggagaaggtagatatgagagatccagatacaatagaaagttacttttttgaatattatcaagttatc 28902608  T
Q  508 aaagaaagagaagggctgaattctcaggatatttacattgcccgtggcatcgttaaaaatgggaaagacaa 578  Q
    ||  ||| |||||||||||||||||||||| |||| | |||||||| |||| |||||||||| ||| ||||    
T  28902607 aagaaaaaagaagggctgaattctcaggatgtttatactgcccgtgacatcattaaaaatggaaaaaacaa 28902537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 69 - 295
Target Start/End: Complemental strand, 28936865 - 28936637
Alignment:
Q  69 gatgccgaatgacttttgaataattttata--ggttcccatttttgctacctttgcggtagagcatcgaagtttaggtgcttctgttgcccaatagctgt 166  Q
    ||||| |||| | |||||||||||||||||  |||||||| | ||||||| | ||| |||||  | ||||||||| |||||| || ||||||| ||||||    
T  28936865 gatgctgaataaattttgaataattttatataggttcccactattgctacatatgccgtagaaaaccgaagtttatgtgcttgtgctgcccaaaagctgt 28936766  T
Q  167 ttgtggaaaatgcttctatgatgctgaatttgctactgtcaaaacaaccaaaggattttgtaggcactgctcaaaacttgcatttctaattgagacaaat 266  Q
    ||||||||| |||| | | | ||||| |||||||| |||||||  || ||||||||||||| ||||||||||||||||||||||||||||||||  ||||    
T  28936765 ttgtggaaattgctaccagggtgctgtatttgctaatgtcaaacgaaacaaaggattttgtgggcactgctcaaaacttgcatttctaattgaggaaaat 28936666  T
Q  267 gctgatgttgattctgatggggtgagata 295  Q
    ||||| ||||||||||||||||| |||||    
T  28936665 gctgaggttgattctgatggggtaagata 28936637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 379 - 534
Target Start/End: Complemental strand, 28892791 - 28892636
Alignment:
Q  379 ccaggctgtaaaaattttccctttctctgtatatcttgtaattatgtgctttttcatttgcaggagaagatagatatgagagatccagatacagttgaaa 478  Q
    |||||||||| |||||| | |||| ||  |||| ||| | ||||||||||||||||||||||||| ||| | ||||||| |||||||||||||   ||||    
T  28892791 ccaggctgtataaatttcctctttatccatataccttatcattatgtgctttttcatttgcaggaaaaggtcgatatgaaagatccagatacacaagaaa 28892692  T
Q  479 gttactttttagaatattatcaagttatcaaagaaagagaagggctgaattctcag 534  Q
    |||||||||| || ||||||||| |||||||  ||| |||||||||||||||||||    
T  28892691 gttacttttttgattattatcaaattatcaagaaaaaagaagggctgaattctcag 28892636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 379 - 487
Target Start/End: Complemental strand, 28935931 - 28935823
Alignment:
Q  379 ccaggctgtaaaaattttccctttctctgtatatcttgtaattatgtgctttttcatttgcaggagaagatagatatgagagatccagatacagttgaaa 478  Q
    |||||| ||| |||||||| |||||||  |||||||| ||||||  ||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||    
T  28935931 ccaggcggtataaattttctctttctccatatatcttataattacatgctttttcattttcaggaaaagatagatatgaaagatccagatacatttgaaa 28935832  T
Q  479 gttactttt 487  Q
    |||||||||    
T  28935831 gttactttt 28935823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 532 - 612
Target Start/End: Complemental strand, 34009631 - 34009551
Alignment:
Q  532 caggatatttacattgcccgtggcatcgttaaaaatgggaaagacaagcgtgacttggatccatatgaaataggtgagggg 612  Q
    |||||| |||| |||||||||| |||| |||| ||| | ||| ||||| |||||||||||||||||||| |||||||||||    
T  34009631 caggatgtttatattgcccgtgacatcattaacaattgaaaaaacaagtgtgacttggatccatatgaagtaggtgagggg 34009551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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