View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11766_low_21 (Length: 253)
Name: NF11766_low_21
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11766_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 28487213 - 28487047
Alignment:
| Q |
1 |
aatggaaatgcacatgaacactgcatacaatttgagattgaaatatatataacaaacctttcaagcaagatgacctttgaaatatctcaaatacttgtca |
100 |
Q |
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| T |
28487213 |
aatgggaatgtacatgaacactacatacaatttgagattggagtgtatataacaaacctgt----catgatgacctttgaaatatctcaagtacttgtta |
28487118 |
T |
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| Q |
101 |
tcatgcaatgatagaatccgcaaagattctggattaattgatcatattattaatgaatatacacaaattta |
171 |
Q |
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| T |
28487117 |
tcatgcaatgatagaagccgcaaagattctggattaattgatcatattagtaatgaatatacaaaaattta |
28487047 |
T |
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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 23836734 - 23836817
Alignment:
| Q |
48 |
tataacaaacctttcaagcaagatgacctttgaaatatctcaaatacttgtcatcatgcaatgatagaatccgcaaagattctg |
131 |
Q |
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| T |
23836734 |
tataacaaacctttcaagcaagataacctttgaaatatctcaaatacttgtcatcatgcaatgatagaatccgcaaagattctg |
23836817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 4928067 - 4928139
Alignment:
| Q |
165 |
aaatttaaaacatacatagtttcaaaacaaacacaaaacatcaattgtaatgttttcattatagacttaaata |
237 |
Q |
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| T |
4928067 |
aaatctaaaacatacatagtttcaaaacaaatataaaacttcaattataatgttttcattgcagacttaaata |
4928139 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 41531926 - 41531987
Alignment:
| Q |
176 |
atacatagtttcaaaacaaacacaaaacatcaattgtaatgttttcattatagacttaaata |
237 |
Q |
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| T |
41531926 |
atacagagtttcaaaacaaacacaaaacttcaattataacattttcattgcagacttaaata |
41531987 |
T |
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