View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11766_low_4 (Length: 620)
Name: NF11766_low_4
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11766_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 10842912 - 10843231
Alignment:
| Q |
13 |
gagatgaaactgaaaatgcttgaaccaaagaaaaatttagtggtgtacattt--------atttagtgactattagattagataaaactcatcttcaagc |
104 |
Q |
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| T |
10842912 |
gagatgaaactgaaaatgcttgaaccaaagaaaaatttagtggtgtatattttatattttatttagtgactattagattagataaaactcatcttcaagc |
10843011 |
T |
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| Q |
105 |
actcatcttcactaaccaaaa-actttatggtctgcaatcttttacatacacaagaaagaggcattgacagtgataagtatacttcaccttcaatataca |
203 |
Q |
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| T |
10843012 |
actcatcttcactaaccaaaaaactttatggtctgcaatctttttcatacacaagaaagaggcattgacagtgataagtatacttcaccttcaatataca |
10843111 |
T |
|
| Q |
204 |
tccacataataattcataattaaaatcctcaaacgaaaacgatttcgt-gaaggaaagaatccaaaacaataaaaacaagttcttcaacatctatgtgga |
302 |
Q |
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| T |
10843112 |
tccacataataattcataattaaaatcctcaaacgaaaacgatttcgtcgaaggaaagaatccaaaacaataaaaacaagttcttcaacatctatgtgga |
10843211 |
T |
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| Q |
303 |
catgaaatttcagagaacaa |
322 |
Q |
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| T |
10843212 |
catgaaatctcagagaacaa |
10843231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 356 - 606
Target Start/End: Original strand, 10843231 - 10843468
Alignment:
| Q |
356 |
acattatatatcttttattaatttgtggtccaacataattatcatcacaaatctctagttttaggctaatcaaatctattaactgtcaattaattccaac |
455 |
Q |
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| T |
10843231 |
acattatatatcttttattaatttgtggaccaacataattatcatcacaaatctctggttttaggctaatctaatccattaactgtcaattaattccaac |
10843330 |
T |
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| Q |
456 |
aacatcaacaacaaaaaataatctaacttggattttatccaaaaacagcttgcattttacaaaacaaaacaattagggttaataaggtttacctgttaaa |
555 |
Q |
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| T |
10843331 |
aaaatcaacaacaaaaatt---ctaattt---------ccaaaaacagcttgcattttacaaaacaaaacaactagggttaataaggtt-acctgttaaa |
10843417 |
T |
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| Q |
556 |
gcattgagaccattgaaacaagttttaaggaaacaagtggtaagaatattg |
606 |
Q |
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| T |
10843418 |
gcattgagaccattgaaacaagttttaaggaaagaagtggtaagaatattg |
10843468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 292 - 587
Target Start/End: Original strand, 2700588 - 2700891
Alignment:
| Q |
292 |
atctatgtggacatgaaatttcagagaacaagaacgtagctcgtacaagagtatataacaccacacatta----tatatcttttattaatttgtggtcca |
387 |
Q |
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|||| |||||||||||| ||||| || |||| || |||| | |||||||||||| |||||||||||| ||||||||||| ||||| || ||| |
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| T |
2700588 |
atctgtgtggacatgaagtttcataggacaacaagatagcacatacaagagtatag--caccacacattaattatatatcttttactaattaa-ggacca |
2700684 |
T |
|
| Q |
388 |
acataattatcatcacaaatctctagttttaggctaatcaaatctattaactgtcaattaattccaacaacatcaacaacaa-aaaataatctaacttgg |
486 |
Q |
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| T |
2700685 |
acataattagcatcacaaaactatggttttaggctaaacaaatctaataattgccaattaaatataacaacaacaataacaacaaaaaaatctaatttaa |
2700784 |
T |
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| Q |
487 |
attttatccaaaaacagct-tgcattttacaaaa------caaaacaattagggttaataaggtttacctgttaaagcattgagaccattgaaacaagtt |
579 |
Q |
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| T |
2700785 |
attttattgaaaaacatctatgttttgtaaaacatactcacaaaacaactaaagttaataaggtt-acctgataaagcattgagaccattgaaacaagtt |
2700883 |
T |
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| Q |
580 |
ttaaggaa |
587 |
Q |
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|||||||| |
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| T |
2700884 |
ttaaggaa |
2700891 |
T |
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