View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11766_low_5 (Length: 571)

Name: NF11766_low_5
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11766_low_5
NF11766_low_5
[»] chr7 (2 HSPs)
chr7 (14-187)||(26896017-26896191)
chr7 (414-457)||(10528847-10528890)
[»] chr8 (4 HSPs)
chr8 (414-480)||(19467760-19467826)
chr8 (414-480)||(19565441-19565507)
chr8 (413-480)||(23699275-23699342)
chr8 (187-267)||(79434-79514)
[»] chr3 (1 HSPs)
chr3 (50-188)||(40893845-40893983)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 26896191 - 26896017
Alignment:
Q  14 gaaatatgatctaaatcagcagtttttagcaaaaaatttatctgttttctatgtcacttattagcttttctgttgttac-acagaattagaagtgctgat 112  Q
    ||||| |||| ||||||||| |||| |||||| ||| | ||||||||||||||||||| || | || ||||  |||||| |||||||||| |||||||||    
T  26896191 gaaatctgatataaatcagctgtttctagcaataaactcatctgttttctatgtcactaatcacctcttctaatgttactacagaattaggagtgctgat 26896092  T
Q  113 ttgaaaaggtggttggtatataaatgcattcagaattacaccttcattatgtttcagcaaagaagatgcaggtta 187  Q
    | ||||||||||||  |||  ||||| |||||||||||||||  | |||||||||||||||||||||||||||||    
T  26896091 tggaaaaggtggttactatggaaatgtattcagaattacaccccctttatgtttcagcaaagaagatgcaggtta 26896017  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 457
Target Start/End: Original strand, 10528847 - 10528890
Alignment:
Q  414 cactacaacaaatatgatctaatacaacaccccatttaaaggac 457  Q
    |||||||| |||||||||||||||||||||| | ||||||||||    
T  10528847 cactacaagaaatatgatctaatacaacaccacttttaaaggac 10528890  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 480
Target Start/End: Original strand, 19467760 - 19467826
Alignment:
Q  414 cactacaacaaatatgatctaatacaacaccccatttaaaggacaacataaaaaccgttttataata 480  Q
    ||||||||||||||||||||||||||||||| || ||||||||| | | ||||||||||||||||||    
T  19467760 cactacaacaaatatgatctaatacaacaccacaattaaaggactaaagaaaaaccgttttataata 19467826  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 480
Target Start/End: Original strand, 19565441 - 19565507
Alignment:
Q  414 cactacaacaaatatgatctaatacaacaccccatttaaaggacaacataaaaaccgttttataata 480  Q
    ||||||||||||||||||||||||||||||| || ||||||||| | | ||||||||||||||||||    
T  19565441 cactacaacaaatatgatctaatacaacaccacaattaaaggactaaagaaaaaccgttttataata 19565507  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 413 - 480
Target Start/End: Original strand, 23699275 - 23699342
Alignment:
Q  413 tcactacaacaaatatgatctaatacaacaccccatttaaaggacaacataaaaaccgttttataata 480  Q
    |||||||||||||||||||||||||||||||| |  ||||||||| | | ||||||||||||||||||    
T  23699275 tcactacaacaaatatgatctaatacaacaccacgattaaaggactaaagaaaaaccgttttataata 23699342  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 79434 - 79514
Alignment:
Q  187 acttgggctttgtttgaaacttttgaggggaggggaatggaaggttttgtggcatcgaaaataaaagggaaaatgaagaaa 267  Q
    ||||||||||||||||  | ||| ||||||||||||| |||||| |||| ||  | |||||||  |||||||||| |||||    
T  79434 acttgggctttgtttgcgagtttggaggggaggggaagggaaggctttgaggagtggaaaatatgagggaaaatggagaaa 79514  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 40893983 - 40893845
Alignment:
Q  50 tttatctgttttctatgtcacttattagcttttctgttgtta-cacagaattagaagtgctgatttgaaaaggtggttggtatataaatgcattcagaat 148  Q
    ||||| ||||||||||| |||| || | |||||| ||||||| |||| |||||| | |||||||| |||||||||| |  |||| ||||| |||  |||     
T  40893983 tttatttgttttctatgccactaataaacttttcggttgttaccacataattaggactgctgattcgaaaaggtggctattatagaaatgtatt-tgaaa 40893885  T
Q  149 tacaccttcattatgtttcagcaaagaagatgcaggttac 188  Q
    |||||||   ||||||||||  ||||||||||||| ||||    
T  40893884 tacacctatcttatgtttcaataaagaagatgcagattac 40893845  T

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