View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11766_low_6 (Length: 532)
Name: NF11766_low_6
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11766_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 42095657 - 42095341
Alignment:
| Q |
19 |
cagaacacttgtgttgacaacttttctagtcctcatatggatcaaaatttgaaggctgcaattggtgctaaggttgttggtgtttctcaagttactagta |
118 |
Q |
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| T |
42095657 |
cagaacacttgtgttgacaacttttctagtcctcatatggatcaaaatttgaaggctgcaattggtgctaaggttgttggtgtttctcaagttactagta |
42095558 |
T |
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| Q |
119 |
atgcacttgccttggttaataactttgcctccaagcatcgttaactatgtac----atacttgtgaaaagtgacataagccgtatgatagtttgttgttt |
214 |
Q |
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| T |
42095557 |
atgcacttgccttggttaataactttgcctccaagcatcgttaactatttacatatatacttgtgaaaagtgacataagccgtatgatagtttgttgttt |
42095458 |
T |
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| Q |
215 |
aatttgttcaattttatgttcatggtttgtatccccttttgtgttctcccaataatactatatttagttctaggaagtgnnnnnnnnngcaactgtaacc |
314 |
Q |
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| T |
42095457 |
aatttgttcaattttatgttcatggtttgtatccccttttgtgttctcccaataatactatatttagttcttggaagtg-ttttttttgcaactgtaacc |
42095359 |
T |
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| Q |
315 |
atgtcgtgcaagatcata |
332 |
Q |
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| T |
42095358 |
gtgtcgtgcaagatcata |
42095341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 372 - 524
Target Start/End: Complemental strand, 42095301 - 42095149
Alignment:
| Q |
372 |
atcattaatgtatttatttatattgttgaaggtatttcatttgtgattgtataatggttatatagttaatgcggtggatatttttcgaaggggaaggggc |
471 |
Q |
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| T |
42095301 |
atcattaatgtatttatttatattgttgaaggtatttcatttgtgattgtataatggttatatagttaatgcggtggatatttttcgaaggggaaggggc |
42095202 |
T |
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| Q |
472 |
actcataatctcaagttcgactaatgttgtttcaattttactattttcttctc |
524 |
Q |
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| T |
42095201 |
actcataatctcaagttcgactaatgttgtttcaattttactatttccttctc |
42095149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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