View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11766_low_9 (Length: 478)
Name: NF11766_low_9
Description: NF11766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11766_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 273 - 468
Target Start/End: Complemental strand, 7244983 - 7244788
Alignment:
| Q |
273 |
ctaagaattcattaattaaacggcatgtaggccataagattgtaaaggtaggatcccgtcccacagccaatccattcagcttgaaagtcatcgttccgat |
372 |
Q |
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| T |
7244983 |
ctaagaattctttaattaaacggcatctaggccataagattgtgaaggtaggatcccgccccacagtcaatccatttagctagaaagtcatcgttccgat |
7244884 |
T |
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| Q |
373 |
tttgatcaatccattcagcttgagagctatcactccactttgnnnnnnncttcccaggttttgtttcatcagctgatctcttcaaatgaatcctat |
468 |
Q |
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| T |
7244883 |
tttgatcaatccattcagcttgagagctatcactccactttgtttttttcttcccaggttttgtttcatcagctgatctcttcaaatgaatcctat |
7244788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 7322988 - 7323098
Alignment:
| Q |
11 |
caaaggacatgttaaaagaaggaagtgctttcccagaacagttttggtaagaatcactgtaatatctttatgaaatcagtaaaacagccagctatagacc |
110 |
Q |
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| T |
7322988 |
caaaggacatgttaaaagaaggaagtgctttcccggaacagttttggtaagaatcactgtaatatctttatgaaatcagtaaaacagccagctatagacc |
7323087 |
T |
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| Q |
111 |
ttaaaggaatg |
121 |
Q |
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| T |
7323088 |
ttaaaggaatg |
7323098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 185 - 380
Target Start/End: Original strand, 7323162 - 7323357
Alignment:
| Q |
185 |
ggcaaagatgaattgtacctaaagcttaagtaatataccaacagttgtacattaaggcaaggtaaaactaatcatnnnnnnnnnnnnnctaagaattcat |
284 |
Q |
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| T |
7323162 |
ggcaaagatgaattgtacctaaagcttaagtaatataccaacagttctacattaaggcaaggtaaaactaaagat-aaaagtaaaaaactagcaattcat |
7323260 |
T |
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| Q |
285 |
taattaaacggcat-gtaggccataagattgtaaaggtaggatcccgtcccacagccaatccattcagcttgaaagtcatcgttccgattttgatca |
380 |
Q |
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| T |
7323261 |
agattaaacggcatattaggccatgagattgtgaaggtaggatcccgtcccgcagtcaatccactcagctagaaagtcgtcattccggtcttgatca |
7323357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 468
Target Start/End: Original strand, 7323439 - 7323526
Alignment:
| Q |
381 |
atccattcagcttgagagctatcactccactttgnnnnnnncttcccaggttttgtttcatcagctgatctcttcaaatgaatcctat |
468 |
Q |
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| T |
7323439 |
atccactcggcttgaaagctatcactccactttgattttgtcctcccacgttttgtttcatcagccgatcttttcaaatgaatcctat |
7323526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 259
Target Start/End: Complemental strand, 7245024 - 7244996
Alignment:
| Q |
231 |
gtacattaaggcaaggtaaaactaatcat |
259 |
Q |
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| T |
7245024 |
gtacattaaggcaaggtaaaactaatcat |
7244996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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