View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11767_high_1 (Length: 749)

Name: NF11767_high_1
Description: NF11767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11767_high_1
NF11767_high_1
[»] chr4 (1 HSPs)
chr4 (13-735)||(24884535-24885257)


Alignment Details
Target: chr4 (Bit Score: 691; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 13 - 735
Target Start/End: Original strand, 24884535 - 24885257
Alignment:
Q  13 atggacatcaatctaaaactagtttacactgtcagtgcatatctttctttctctactcggagaaggattcatatgagtaaaatttgaaatattcataatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24884535 atggacatcaatctaaaactagtttacactgtcagtgcatatctttctttctctactcggagaaggattcatatgagtaaaatttgaaatattcataatc 24884634  T
Q  113 ttatcgtcctatttcacagcacctttcacagtcagctacaaatttggtggtttaattactatacactgatcgtgtaaagttattttacacatgataacgt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24884635 ttatcgtcctatttcacagcacctttcacagtcagctacaaatttggtggtttaattactatacactgatggtgtaaagttattttacacatgataacgt 24884734  T
Q  213 tgtcatgtcaattaatgaatacgacaacagacaattgtgtattcgtattcagtaattgatctggcaatacattattgaattcaaagggaaaagaggagga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24884735 tgtcatgtcaattaatgaatacgacaacagacaattgtgtattcgtattcagtaattgatctggcaatacattattgaattcaaagggaaaagaggagga 24884834  T
Q  313 acctcacctttgaaacatcaaattcaagatcaacgagtcgattctcagagccaccaaaatctttacaccttccatcatcaaccttaaccaacctcgcttt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24884835 acctcacctttgaaacatcaaattcaagatcaacgagtcgattctcagagccaccaaaatctttacaccttccatcatcaaccttaaccaacctcgcttt 24884934  T
Q  413 ctccgaaaccttcacaacagaagaatccaaatccttcctaagcaaactcccacccataataatccccatatccaaagccctaagcgcctccttaaactct 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  24884935 ctccgaaaccttcacaacagaagaatccaaatccttcctaagcaaactcccacccataataatccccatatccaaagccctaagtgcttccttaaactct 24885034  T
Q  513 ccattttcatagcaacacttagcaacttgcaaacacgccatcgagtacgcgtcacgccacaccggcaacaccgagtgccacggaccagagtgcagctgct 612  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24885035 ccattttcatagcaacacttcgcaacttgcaaacaggccatcgagtacgcgtcacgccacaccggcaacaccgagtgccacggaccagagtgcagctgct 24885134  T
Q  613 cccacgccatctcgcgaactgcttctgcagcgcgaatgtcgccggcggcagcgagggaggacatacgtacgtaggcgtagcctccgtgggatgagatgga 712  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  24885135 cccacgccatctcgcgaactgcttctgctgcgcgaatgtcgccggcggcagcgagggaggacatacgaacgtaggcgtagcctccgtaggatgagatgga 24885234  T
Q  713 gtggaggagtgtgggagattctg 735  Q
    |||||||||||||||||||||||    
T  24885235 gtggaggagtgtgggagattctg 24885257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University